View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_114 (Length: 258)

Name: NF1459_low_114
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_114
NF1459_low_114
[»] chr1 (14 HSPs)
chr1 (15-258)||(10280716-10280959)
chr1 (205-255)||(36070251-36070301)
chr1 (180-255)||(51929387-51929462)
chr1 (174-255)||(18327065-18327146)
chr1 (172-220)||(4197166-4197214)
chr1 (177-249)||(23402107-23402179)
chr1 (168-255)||(4757408-4757495)
chr1 (172-255)||(5157142-5157225)
chr1 (186-252)||(31517671-31517737)
chr1 (180-251)||(5886917-5886984)
chr1 (180-249)||(41638233-41638302)
chr1 (175-255)||(2777962-2778041)
chr1 (173-249)||(37416881-37416957)
chr1 (187-255)||(38247398-38247465)
[»] chr2 (15 HSPs)
chr2 (181-255)||(43529784-43529858)
chr2 (180-255)||(39622021-39622096)
chr2 (180-247)||(43259913-43259980)
chr2 (198-255)||(787402-787459)
chr2 (182-230)||(14844908-14844956)
chr2 (181-255)||(5902477-5902549)
chr2 (180-255)||(9478027-9478102)
chr2 (180-255)||(15120253-15120328)
chr2 (180-214)||(18961959-18961993)
chr2 (173-255)||(28803448-28803530)
chr2 (182-256)||(41905843-41905917)
chr2 (180-229)||(15370248-15370297)
chr2 (171-255)||(8017504-8017588)
chr2 (169-229)||(27317021-27317080)
chr2 (182-230)||(37518752-37518800)
[»] chr8 (10 HSPs)
chr8 (176-229)||(27465447-27465500)
chr8 (199-255)||(2487952-2488008)
chr8 (186-242)||(3953885-3953941)
chr8 (180-255)||(6526177-6526252)
chr8 (180-222)||(39881646-39881688)
chr8 (207-249)||(42215042-42215084)
chr8 (187-256)||(7918713-7918782)
chr8 (180-229)||(14926907-14926956)
chr8 (198-255)||(30191084-30191141)
chr8 (198-254)||(38537662-38537718)
[»] chr4 (10 HSPs)
chr4 (174-255)||(18628472-18628553)
chr4 (173-255)||(2996643-2996725)
chr4 (173-222)||(47146047-47146096)
chr4 (187-255)||(44320019-44320087)
chr4 (180-255)||(36577467-36577542)
chr4 (217-255)||(1137782-1137820)
chr4 (167-249)||(44938792-44938873)
chr4 (217-255)||(45622311-45622349)
chr4 (180-229)||(46860014-46860063)
chr4 (197-249)||(22471350-22471402)
[»] chr7 (7 HSPs)
chr7 (173-247)||(3836601-3836675)
chr7 (180-254)||(32410611-32410685)
chr7 (181-249)||(9050710-9050778)
chr7 (180-251)||(45557009-45557080)
chr7 (181-255)||(9038181-9038255)
chr7 (181-255)||(25670512-25670586)
chr7 (175-255)||(44615024-44615104)
[»] chr6 (7 HSPs)
chr6 (181-243)||(13908322-13908384)
chr6 (171-255)||(769208-769292)
chr6 (205-253)||(4308641-4308689)
chr6 (175-255)||(26559159-26559239)
chr6 (182-255)||(7148736-7148809)
chr6 (171-252)||(8010430-8010511)
chr6 (183-255)||(30863316-30863388)
[»] chr5 (5 HSPs)
chr5 (180-255)||(17368746-17368817)
chr5 (217-255)||(12857666-12857704)
chr5 (198-247)||(912590-912639)
chr5 (182-255)||(11457168-11457241)
chr5 (162-255)||(12459908-12460001)
[»] chr3 (11 HSPs)
chr3 (180-253)||(41644370-41644443)
chr3 (169-249)||(20194947-20195027)
chr3 (183-255)||(21574560-21574634)
chr3 (176-255)||(24281117-24281196)
chr3 (185-244)||(25925810-25925869)
chr3 (207-249)||(46434565-46434607)
chr3 (185-254)||(24785332-24785401)
chr3 (180-249)||(33880482-33880551)
chr3 (186-255)||(37273204-37273273)
chr3 (167-255)||(45541641-45541729)
chr3 (184-252)||(47584523-47584591)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 10280959 - 10280716
Alignment:
Q  15 aatatcaaggatcaccatgtgactacaattgttatcgaaacccctatttaaaaatcatgtatgccactacttgctatattgctatagcgttttaagggta 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280959 aatatcaaggatcaccatgtgactgcaattgttatcgaaacccctatttaaaaatcatgtatgccactacttgctatattgctatagcgttttaagggta 10280860  T
Q  115 ggctgctacttgactacatagaattcaaagagtgtggctcgaatttaaaaccaagagtctatttagattgacttatttgaacctatctattggcataagc 214  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280859 cgctgctacttgactacatagaattcaaagagtgtggctcgaatttaaaaccaagagtctatttagattgacttatttgaacctatctattggcataagc 10280760  T
Q  215 aattgtgacactgttcaggagaacttatgaaaacaacttatttc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10280759 aattgtgacactgttcaggagaacttatgaaaacaacttatttc 10280716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 36070301 - 36070251
Alignment:
Q  205 tggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  36070301 tggcataagcacttgtgagactgtttaggagaacttatgaaaacaacttat 36070251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 51929387 - 51929462
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||| ||||| | |||||| || ||||||||  |||||||||||| | ||||||||||||||||| |||||    
T  51929387 gattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaacagcttat 51929462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 18327065 - 18327146
Alignment:
Q  174 tatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||| ||||| ||||||||| | |||||| || |||||||| || ||||||| ||  | ||||||||||||||||||||||    
T  18327065 tatttggattggcttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttat 18327146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 4197166 - 4197214
Alignment:
Q  172 tctatttagattgacttatttgaacctatctattggcataagcaattgt 220  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||| ||||    
T  4197166 tctatttggattgacttatttgaacttatcaattggcataagcacttgt 4197214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 23402179 - 23402107
Alignment:
Q  177 ttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||| || ||||  ||||| ||| ||||||||    
T  23402179 ttagattgacttatttgaacttatctattggtgtaagcacttgtgtcaatgtttcggagagcttttgaaaaca 23402107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 4757495 - 4757408
Alignment:
Q  168 agagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||| ||| | ||||||||||||| | ||||||||| ||||| || |||||| ||  ||  | ||||||||||||||||||||||    
T  4757495 agagtctctttggtttgacttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttat 4757408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 5157225 - 5157142
Alignment:
Q  172 tctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||| ||||||||||||||||| ||||||  | ||||| || |||||| ||||||  ||||| |||||  |||||||||||    
T  5157225 tctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 31517671 - 31517737
Alignment:
Q  186 cttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaact 252  Q
    ||||||||| | ||| || ||||||||||| |||||| ||||||  ||||||||||| |||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaact 31517737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 5886917 - 5886984
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaac 251  Q
    ||||||||||||||| | |||||   |||||||||||||| || ||||||  ||||||||||||||||||||    
T  5886917 gattgacttatttgagcttatct---ggcataagcaattgcgagactgttt-ggagaacttatgaaaacaac 5886984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 41638233 - 41638302
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||| |||| |||| |||||||| ||||||||||| |||||| ||||||  |||||  |||||||||||    
T  41638233 gattgtcttaattgagcctatctactggcataagcatttgtgagactgtttgggagagattatgaaaaca 41638302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 2778041 - 2777962
Alignment:
Q  175 atttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| ||||| ||||||| | | |||||||| |||||||   |||||| |||||| |||||||||||||||| ||||||||    
T  2778041 atttggattggcttattttagcttatctatttgcataagtt-ttgtgagactgtttaggagaacttatgaaaccaacttat 2777962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 37416957 - 37416881
Alignment:
Q  173 ctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||||||||| |||||||||| | |||||| |||||||||||  ||||| ||| | | | ||||| ||||||||||    
T  37416957 ctatttagattaacttatttgagcttatctagtggcataagcatctgtgagactctacggaagaacgtatgaaaaca 37416881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 38247465 - 38247398
Alignment:
Q  187 ttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||| |||||| |||||||||   ||||| |||||||  |||||||||||||||||| |||||    
T  38247465 ttatttgaacttatctactggcataagtt-ttgtgtcactgtttgggagaacttatgaaaacagcttat 38247398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 43529784 - 43529858
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||| | |||||||||| ||||||| || ||||||||||  |||||| ||||||||||| |||||    
T  43529784 attgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttat 43529858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 39622096 - 39622021
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| |||||||||||| |||||| | | ||||||| ||| |||||||||   |||||||||||||||||||||||    
T  39622096 gatttacttatttgaacttatctacttgtataagcacttgcgacactgtttgagagaacttatgaaaacaacttat 39622021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 43259980 - 43259913
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaa 247  Q
    ||||| ||||||||||| |||||| | ||||||||| |||||||| ||||| ||| ||||||||||||    
T  43259980 gattggcttatttgaacttatctactagcataagcacttgtgacaatgttcgggaaaacttatgaaaa 43259913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 787459 - 787402
Alignment:
Q  198 tatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||| ||||||||||| |||||||||||||   ||||||||||||||||| |||||    
T  787459 tatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttat 787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 14844908 - 14844956
Alignment:
Q  182 ttgacttatttgaacctatctattggcataagcaattgtgacactgttc 230  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||    
T  14844908 ttgacttatttgaagttatctattggcataagcacttgtgaaactgttc 14844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 5902477 - 5902549
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||||| ||||||  ||||||| || |||||| ||||||  | |||||||||||||||| |||||    
T  5902477 attgacttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttat 5902549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 9478102 - 9478027
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||||||| |||||||| ||| || || || ||| ||| ||| ||||  ||||||||||||||||||    
T  9478102 gattgacttatttgaacttatctattagcacaaacacttatgagactattcgggagtccttatgaaaacaacttat 9478027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 15120328 - 15120253
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||||||| |||||| | |||||| || ||||||  |||||  ||||| |||||| |||||||||||    
T  15120328 gattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttat 15120253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 18961959 - 18961993
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagc 214  Q
    ||||||||||||||||||||||||||| |||||||    
T  18961959 gattgacttatttgaacctatctattgtcataagc 18961993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 28803448 - 28803530
Alignment:
Q  173 ctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||| ||||||||||||||| | ||||||  ||||||||||  ||||| ||||||   |||||| |||| |||||||||||    
T  28803448 ctatttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttat 28803530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 41905843 - 41905917
Alignment:
Q  182 ttgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttatt 256  Q
    ||||||||||||||| ||| |||| |||||| || || ||| ||| |||  |||| |||||||||||||||||||    
T  41905843 ttgacttatttgaacttatttatttgcataaacacttatgagactcttcgagagagcttatgaaaacaacttatt 41905917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15370248 - 15370297
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgtt 229  Q
    ||||||||||||||| | |||||| ||||||||||| |||||| ||||||    
T  15370248 gattgacttatttgagcttatctactggcataagcatttgtgagactgtt 15370297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 8017588 - 8017504
Alignment:
Q  171 gtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| ||| |||||||||||||||   ||||||||| |||||||| |||||  | | ||  |||||||||||||||||| |||||    
T  8017588 gtctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttat 8017504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 27317021 - 27317080
Alignment:
Q  169 gagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgtt 229  Q
    |||||| ||| ||||||||||||| | | |||||||||||||||||  |||||||||||||    
T  27317021 gagtctgtttggattgacttattttagcttatctattggcataagc-tttgtgacactgtt 27317080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 37518752 - 37518800
Alignment:
Q  182 ttgacttatttgaacctatctattggcataagcaattgtgacactgttc 230  Q
    ||||||||||||||  ||||||| |||||||||| |||||| |||||||    
T  37518752 ttgacttatttgaagttatctatcggcataagcacttgtgaaactgttc 37518800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 27465500 - 27465447
Alignment:
Q  176 tttagattgacttatttgaacctatctattggcataagcaattgtgacactgtt 229  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| || ||||||    
T  27465500 tttagattgacttatttgaacttatctattggcataagcacttgcgagactgtt 27465447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 2487952 - 2488008
Alignment:
Q  199 atctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||| || |||||||| |||||| ||||||  ||||||||||||||||||||||||    
T  2487952 atctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttat 2488008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 3953941 - 3953885
Alignment:
Q  186 cttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttat 242  Q
    ||||||||| |||||||| ||||||||||| |||||| ||||||  |||||||||||    
T  3953941 cttatttgagcctatctactggcataagcacttgtgaaactgtttgggagaacttat 3953885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 6526177 - 6526252
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||| || |||||||| ||||||||||  |||||| | ||||   ||||||||| |||||||||||||    
T  6526177 gattgacttattcgagcctatctactggcataagcccttgtgagattgtttgagagaacttaggaaaacaacttat 6526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 39881646 - 39881688
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtga 222  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtga 39881688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 42215042 - 42215084
Alignment:
Q  207 gcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||||||| |||||||||||||  ||||||||||||||||||    
T  42215042 gcataagcacttgtgacactgtttgggagaacttatgaaaaca 42215084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 7918713 - 7918782
Alignment:
Q  187 ttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttatt 256  Q
    |||||| ||| |||||| | |||||| || |||||| ||||||  ||||| |||||||||||||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttatt 7918782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 14926907 - 14926956
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgtt 229  Q
    ||||||||||||||||| ||| || ||||||||||| |||||| ||||||    
T  14926907 gattgacttatttgaacttatttactggcataagcacttgtgagactgtt 14926956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 30191084 - 30191141
Alignment:
Q  198 tatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||||||| |||| | ||||||  ||||| |||||| |||||||||||    
T  30191084 tatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttat 30191141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 38537718 - 38537662
Alignment:
Q  198 tatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaactta 254  Q
    |||||| ||| ||| ||| |||||||| ||||| || ||||||||||||||||||||    
T  38537718 tatctactggtataggcatttgtgacattgttcgggggaacttatgaaaacaactta 38537662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 18628472 - 18628553
Alignment:
Q  174 tatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||| ||||||| | |||||| || ||||| || |||||| ||||||  ||||| ||||||||||||||||||    
T  18628472 tatttagattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 2996725 - 2996643
Alignment:
Q  173 ctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||  ||||||||||| ||| ||||| |||||||| || ||| ||||||   |||| ||||||||||||||||||    
T  2996725 ctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttat 2996643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 47146096 - 47146047
Alignment:
Q  173 ctatttagattgacttatttgaacctatctattggcataagcaattgtga 222  Q
    |||||| ||||||||||||||||| ||| |||||||||||||| ||||||    
T  47146096 ctatttggattgacttatttgaacttatatattggcataagcacttgtga 47146047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 44320087 - 44320019
Alignment:
Q  187 ttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||| | || |||||||||||| ||||||||| ||||||  ||||| ||||||||||||| ||||    
T  44320087 ttatttgagcttacctattggcataaacaattgtgagactgtttgggagagcttatgaaaacaaattat 44320019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 36577467 - 36577542
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||||||  | |||||||  ||||||| |||||| ||||||  ||||||||||  ||||||||||||    
T  36577467 gattgacttatttgaatttgtctattgagataagcacttgtgagactgtttcggagaacttacaaaaacaacttat 36577542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 1137820 - 1137782
Alignment:
Q  217 ttgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  1137820 ttgtgacactgtttaggagaacttatgaaaacatcttat 1137782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 44938873 - 44938792
Alignment:
Q  167 aagagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||| || ||| ||||| ||||||||||| ||||| |||||||||||| ||| ||| || || | |||||||||||||||||    
T  44938873 aagagcctgtttcgattggcttatttgaacttatcttttggcataagcacttgggacccttttga-gagaacttatgaaaaca 44938792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 45622349 - 45622311
Alignment:
Q  217 ttgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  45622349 ttgtgagactgttcgggagaacttatgaaaacaacttat 45622311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 46860063 - 46860014
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgtt 229  Q
    ||||||||||||||||| ||||||||  |||||||| |||||| ||||||    
T  46860063 gattgacttatttgaacttatctattcacataagcacttgtgaaactgtt 46860014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 22471402 - 22471350
Alignment:
Q  197 ctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||||| || |||||||| |||||| ||||||  ||||||||||||||||||    
T  22471402 ctatctactgacataagcacttgtgagactgtttgggagaacttatgaaaaca 22471350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 3836601 - 3836675
Alignment:
Q  173 ctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaa 247  Q
    |||||| ||||| ||||||||| | |||||| |||| |||||| |||||| ||||||  ||||||||||||||||    
T  3836601 ctatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaa 3836675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 32410685 - 32410611
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaactta 254  Q
    ||||| ||||||||| | |||||||||||||||||| |||||| ||||||  | | |||||||||||||| ||||    
T  32410685 gattggcttatttgagcttatctattggcataagcatttgtgaaactgttttgaataacttatgaaaacagctta 32410611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 9050778 - 9050710
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    |||| ||||||||||||||||||  |||||| |||  ||||| ||||||||  ||||||||||||||||    
T  9050778 attggcttatttgaacctatctacaggcataggcacctgtgagactgttcaaaagaacttatgaaaaca 9050710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 45557009 - 45557080
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaac 251  Q
    |||||||||||||||||||||| |||| ||| || | || ||| | ||||  ||||||||||||||||||||    
T  45557009 gattgacttatttgaacctatcaattgacatcagtatttatgagattgtttcggagaacttatgaaaacaac 45557080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 9038255 - 9038181
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| |||| |||||||||||||  |||||||||| || ||| | ||||||| ||||||||| |||||| |||||    
T  9038255 attggcttagttgaacctatctacaggcataagcacttatgagaatgttcagaagaacttataaaaacagcttat 9038181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 25670512 - 25670586
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||| |||| | ||||||||| |||||||  |||||| ||||||   || ||||||||||||||||||||    
T  25670512 attgacttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttat 25670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 44615024 - 44615104
Alignment:
Q  175 atttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| ||||| |||| |||| | |||||| | |||||| || |||  | ||||||||||||| ||||||||||||||||||    
T  44615024 atttggattgccttaattgagcttatctactagcataaccacttgcaaaactgttcaggagagcttatgaaaacaacttat 44615104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 13908384 - 13908322
Alignment:
Q  181 attgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatg 243  Q
    |||||||||||||||| |||||| || ||||| || |||||||||| || |||||||||||||    
T  13908384 attgacttatttgaacttatctactgacataaacacttgtgacactctttaggagaacttatg 13908322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 769292 - 769208
Alignment:
Q  171 gtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||| |||| |||| | |||||||||| |||| || |||||| ||||||  |  ||||||||||||||| |||||    
T  769292 gtctatttagattggcttagttgagcatatctattggtataaacacttgtgagactgtttggatgaacttatgaaaacatcttat 769208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 4308689 - 4308641
Alignment:
Q  205 tggcataagcaattgtgacactgttcaggagaacttatgaaaacaactt 253  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||||    
T  4308689 tggcataagcactagtgacactgtttgggagaacttatgaaaacaactt 4308641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 26559159 - 26559239
Alignment:
Q  175 atttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||| |||| ||||||||||   || ||| ||||||||||| |||||| ||||||  | ||||||||||||||||||||||    
T  26559159 atttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaacttat 26559239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 7148809 - 7148736
Alignment:
Q  182 ttgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||| | |||||| | ||||||||| |||||| | ||||||| ||| |||| | |||||||||||    
T  7148809 ttgacttatttgagcttatctagtcgcataagcacttgtgagagtgttcagcagagcttacggaaacaacttat 7148736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 8010511 - 8010430
Alignment:
Q  171 gtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaact 252  Q
    |||| ||| ||||||||||| ||| | ||||||||||||||| || |||||| || || ||||||| |||||  ||||||||    
T  8010511 gtctgtttggattgacttatgtgagcttatctattggcataaacatttgtgagacagtccaggagagcttatagaaacaact 8010430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 30863388 - 30863316
Alignment:
Q  183 tgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||| ||||| ||||||||||| || |||| | ||| ||  | ||| ||||||||||||||||||    
T  30863388 tgacttatttgagcctatttattggcataaacacttgttagactctttggtagagcttatgaaaacaacttat 30863316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 17368817 - 17368746
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||| ||| |||||| ||||||||||| |||||||||    |  |||||||||||||||||||||||    
T  17368817 gattgacttatttaaacttatctactggcataagcacttgtgacac----cgagagaacttatgaaaacaacttat 17368746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 12857666 - 12857704
Alignment:
Q  217 ttgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  12857666 ttgtgaaactgttccggagaacttatgaaaacaacttat 12857704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 912590 - 912639
Alignment:
Q  198 tatctattggcataagcaattgtgacactgttcaggagaacttatgaaaa 247  Q
    ||||||||| |||||||| ||||| ||||||| || ||||||||||||||    
T  912590 tatctattgtcataagcacttgtggcactgtttagaagaacttatgaaaa 912639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 11457241 - 11457168
Alignment:
Q  182 ttgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||||| | |||||||||||| || || |||||| ||||||  | ||| |||||| |||||||||||    
T  11457241 ttgacttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttat 11457168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 12459908 - 12460001
Alignment:
Q  162 aaaccaagagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||| |||| ||| |||||||||||||   | |||||  || ||||||||  ||||| ||||||  ||||||| ||||||||||||||||    
T  12459908 aaaccaagggtctgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttat 12460001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 41644370 - 41644443
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaactt 253  Q
    |||| |||| ||||| | |||||| | ||||||||| ||| ||||||||| |||||||||||| ||||||||||    
T  41644370 gattaacttctttgagcttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaactt 41644443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 20194947 - 20195027
Alignment:
Q  169 gagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    |||||||||| |||||| |||||||||| |||||  | ||||||||| |||||| ||||||   |||| ||||||||||||    
T  20194947 gagtctatttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaaca 20195027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 21574634 - 21574560
Alignment:
Q  183 tgacttatttgaacctatctattggcataagcaattg--tgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||| |||||| ||||| || ||||||  ||| ||||||  ||||| ||||||||||||||||||    
T  21574634 tgacttatttgaacttatctactggcaaaatcaattgtttgagactgtttgggagagcttatgaaaacaacttat 21574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 24281196 - 24281117
Alignment:
Q  176 tttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    |||||||||||||||||||  ||||||| ||| ||||||| |||||  | ||||   |||| ||||||||||||||||||    
T  24281196 tttagattgacttatttgagtctatctactggtataagcacttgtgtgattgtttgagagagcttatgaaaacaacttat 24281117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 25925869 - 25925810
Alignment:
Q  185 acttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatga 244  Q
    |||||||||||| |||||| ||||||||||| |||| ||||||||   ||||||||||||    
T  25925869 acttatttgaacttatctactggcataagcacttgtaacactgttttagagaacttatga 25925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 46434565 - 46434607
Alignment:
Q  207 gcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  46434565 gcataagcaattgtgacactgtttgggagaacttacgaaaaca 46434607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 24785401 - 24785332
Alignment:
Q  185 acttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaactta 254  Q
    |||||||| | | ||||||||| |||||||| |||||||||||||  ||||||||||  |||||| ||||    
T  24785401 acttattttagcttatctattgccataagcacttgtgacactgtttcggagaacttacaaaaacatctta 24785332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 33880482 - 33880551
Alignment:
Q  180 gattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaaca 249  Q
    ||||| ||||||||| | ||||||||| ||||| || ||| || ||||||  ||||||||||||||||||    
T  33880482 gattggcttatttgagcttatctattgacataatcatttgagaaactgtttgggagaacttatgaaaaca 33880551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 37273273 - 37273204
Alignment:
Q  186 cttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||||||||| ||| |||| ||||||||| | |||| ||||||  ||||| |||||| |||||||||||    
T  37273273 cttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttat 37273204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 45541729 - 45541641
Alignment:
Q  167 aagagtctatttagattgacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaacttat 255  Q
    ||||| || ||| ||||||||||||||| | ||| || ||| |||| || |||| | |||||| || |||||||||||||||| |||||    
T  45541729 aagagcctgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttat 45541641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 47584591 - 47584523
Alignment:
Q  184 gacttatttgaacctatctattggcataagcaattgtgacactgttcaggagaacttatgaaaacaact 252  Q
    |||| |||||||||||||||||| |||||||| |||||| ||| ||   |||| |||||||||| ||||    
T  47584591 gactcatttgaacctatctattgacataagcacttgtgagactatttgagagagcttatgaaaagaact 47584523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University