View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_119 (Length: 253)
Name: NF1459_low_119
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_119 |
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| [»] scaffold1450 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 8539345 - 8539093
Alignment:
| Q |
4 |
aaacatgttgaaatttatgtttttagatgtggttttatgagaaataatgtattaaggtacaacagttaaaatacacacaatgacatgactaattaaaaat |
103 |
Q |
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| T |
8539345 |
aaacatgttgagatttctgtttttagatgtggttttatgagaaataatatattaaggtacaacaattcaaatacacacaatgacatgactaattaaaaat |
8539246 |
T |
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| Q |
104 |
ttgatttaactttttataaagagtttg-agttttatccatttgtatgcaccttgcaatttctgctc-------------ttagagtaaaaattgtgaagt |
189 |
Q |
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| T |
8539245 |
ttgatttaactttttataaagattttgaagttttatccatttgtatgcaccttgcaatttctgctcttatgatctagcattagagtagaaattgtgaagt |
8539146 |
T |
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| Q |
190 |
gtgtgaaaacggtataatgtcaaactctttaaagaaataaattcaagaatttt |
242 |
Q |
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| T |
8539145 |
gtgtgaaaacggtataatgtcaaagtctttaaagaaataaattcaagaatttt |
8539093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1450 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1450
Description:
Target: scaffold1450; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 1429 - 1184
Alignment:
| Q |
4 |
aaacatgttgaaatttatgtttttagatgtggttttatgagaaataatgtattaaggtacaacagttaaaatacacacaatgacatgactaattaaaaat |
103 |
Q |
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| T |
1429 |
aaacatgttgagatttctgtttatagatatggttttttgagagataatgtattaaggtacaacaattcaagtatatacaatgacatgactaattaaaaac |
1330 |
T |
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| Q |
104 |
ttgatttaactttttataaagagtttg-agttttatccatttgtatgcaccttgcaatttctgc--------tc-----ttagagtaaaaattgtgaagt |
189 |
Q |
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| T |
1329 |
ttgatttaaatttttatgaagattttgaagttttaatcatttgtacgcaccttacaatttctgcctttatgatctagcattagagtagaaatcgtgaagt |
1230 |
T |
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| Q |
190 |
gtgtgaaaacggtataatgtcaaactctttaaagaaataaattcaa |
235 |
Q |
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| T |
1229 |
gtgtgaaaacggtctaatgtcaagatcttcaaagaaataaattcaa |
1184 |
T |
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