View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_121 (Length: 252)
Name: NF1459_low_121
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_121 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 38691318 - 38691536
Alignment:
| Q |
20 |
aaataaacagaagagaatttccacaattttgttgctatcaatttttcggttagtatattaacaacatttgcatccatgagatcttattgtatatatcaat |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38691318 |
aaataaacagaagcgaatttccacaattttgttgctatcaatttttcggttagtatattaacaacatttgcatacatgagatcttattgtatatatcaat |
38691417 |
T |
|
| Q |
120 |
cccatttaaagacaacatatgacttgctttgtctttaacccccaaacctgttaagtgtaacatgaagggtcaatttaatgttaaaattgtaccatctaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38691418 |
cccatttaaagacaacatatgacttgctttgtctttaacccctaaacctgttaagtgtaacatgaagggtcaatttaatgttaaaattgtaccatctaat |
38691517 |
T |
|
| Q |
220 |
attcaatgacaagtattat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38691518 |
attcaatgacaagtattat |
38691536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University