View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_122 (Length: 251)
Name: NF1459_low_122
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 5618978 - 5619205
Alignment:
| Q |
18 |
caatttaccgcctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttatctgctttcacattaatattttat |
117 |
Q |
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| T |
5618978 |
caatttacctgctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttacctgctttcacattaatattttat |
5619077 |
T |
|
| Q |
118 |
ctgttgacgtattttcaatttatctactttcacacaaataatttatttgtttttgcattaacagtttatttgctttttcattagattcaattctccataa |
217 |
Q |
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| T |
5619078 |
ctgttgatgtattttcaatttatctactttcacacaactaatttatttgtttttgcattaacagtttattttctttttcattatattcaattctccataa |
5619177 |
T |
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| Q |
218 |
tctacctttgtcattataccacctttgc |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5619178 |
tctacctttgtcattataccacctttgc |
5619205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 5618943 - 5619016
Alignment:
| Q |
29 |
ctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttatctgctttc |
102 |
Q |
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| T |
5618943 |
ctttctcataaccaacttatctgctttcgcataatcaatttacctgctttcacataacaaatttacctgctttc |
5619016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 21164265 - 21164492
Alignment:
| Q |
18 |
caatttaccgcctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttatctgctttcacattaatattttat |
117 |
Q |
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| T |
21164265 |
caatttacctgctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttacctgctttcacattaatattttat |
21164364 |
T |
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| Q |
118 |
ctgttgacgtattttcaatttatctactttcacacaaataatttatttgtttttgcattaacagtttatttgctttttcattagattcaattctccataa |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
21164365 |
ctgttgatgtattttcaatttatctactttcacacaactaatttatttgtttttgcattaacagtttattttctttttcattatattcaattctccataa |
21164464 |
T |
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| Q |
218 |
tctacctttgtcattataccacctttgc |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
21164465 |
tctacctttgtcattataccacctttgc |
21164492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 21164230 - 21164303
Alignment:
| Q |
29 |
ctttcacataacaaatttacctgctttcgtataaccaatttacttgctttcacattatcaatttatctgctttc |
102 |
Q |
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||||| |||||| || ||| ||||||||| |||| |||||||| ||||||||||| | |||||| |||||||| |
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| T |
21164230 |
ctttctcataaccaacttatctgctttcgcataatcaatttacctgctttcacataacaaatttacctgctttc |
21164303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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