View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_123 (Length: 250)
Name: NF1459_low_123
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43113891 - 43113651
Alignment:
| Q |
1 |
aagcagaacatgaatatttttctttcaaaagagaaaacctgctgctacaaatggcagactccaaaagtataaaatgaacaaaaggaaacaaaatgtgtat |
100 |
Q |
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| T |
43113891 |
aagcagaacatgaatatttttctttcaaaagagaaaacctgctgctacaaatggcagactccaaaagtataaaatgaacaaaaggaaacaaaatgtgtat |
43113792 |
T |
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| Q |
101 |
ttcagagcaagcatcaatggcctcactgatagaaacccaaaaattccatgagac--tgacacattactctaaatttccggtcttagcctcatcgttttta |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43113791 |
ttcagagcaagcatcaatcgcctcactgatagaaacccaaaaattccatgagactgtgacacattactctaaatttccggtcttagcctcatcgttttta |
43113692 |
T |
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| Q |
199 |
ttcatggctttccttgctaactcataacctgcaaagttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43113691 |
ttcatggctttccttgctaactcataacctgcaaagttcat |
43113651 |
T |
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