View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_124 (Length: 250)
Name: NF1459_low_124
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_124 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 50595170 - 50595403
Alignment:
| Q |
17 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
116 |
Q |
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| T |
50595170 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
50595269 |
T |
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| Q |
117 |
gccctattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
216 |
Q |
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| T |
50595270 |
gcactattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
50595369 |
T |
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| Q |
217 |
ttaaatacccaaattttgtatacatatcaatcaa |
250 |
Q |
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| T |
50595370 |
ttaaatccccaaattttgtatacatatcaatcaa |
50595403 |
T |
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