View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_125 (Length: 250)

Name: NF1459_low_125
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_125
NF1459_low_125
[»] chr3 (8 HSPs)
chr3 (16-235)||(10232042-10232261)
chr3 (16-235)||(10377162-10377382)
chr3 (16-235)||(9997436-9997656)
chr3 (16-235)||(10105940-10106160)
chr3 (16-140)||(10228376-10228505)
chr3 (127-231)||(10365207-10365311)
chr3 (144-235)||(10228247-10228339)
chr3 (10-52)||(10365154-10365196)
[»] chr5 (6 HSPs)
chr5 (16-140)||(26801753-26801882)
chr5 (16-140)||(26809303-26809432)
chr5 (16-140)||(26824330-26824459)
chr5 (144-235)||(26801624-26801716)
chr5 (144-235)||(26809174-26809266)
chr5 (144-235)||(26824201-26824293)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 10232261 - 10232042
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10232261 aatatgttatcgtcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 10232162  T
Q  116 tattttgatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctaaggattctatatgatat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10232161 tattttgatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctaaggattctatatgatat 10232062  T
Q  216 ttaaaaacttatgtattaat 235  Q
    ||||||||||||||||||||    
T  10232061 ttaaaaacttatgtattaat 10232042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 10377162 - 10377382
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377162 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 10377261  T
Q  116 tatttt-gatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctaaggattctatatgata 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377262 tatttttgatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctaaggattctatatgata 10377361  T
Q  215 tttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||    
T  10377362 tttaaaaacttatgtattaat 10377382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 9997656 - 9997436
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997656 aatatgttatcatcagtaacaagccattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 9997557  T
Q  116 tattttgatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataa-aaaatattaagaaaagtcttcgctaaggattctatatgata 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9997556 tattttgatgtgtttctctgcccttcaaatttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgata 9997457  T
Q  215 tttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||    
T  9997456 tttaaaaacttatgtattaat 9997436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 10106160 - 10105940
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10106160 aatatgttatcatcagtaacaagccattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatgaaatattggtgtggagacaagattttaa 10106061  T
Q  116 tattttgatgtgtttctctgcccttgaaatttcagtttagtttcacaaatctaaataa-aaaatattaagaaaagtcttcgctaaggattctatatgata 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10106060 tattttgatgtgtttctctgcccttcaaatttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgata 10105961  T
Q  215 tttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||    
T  10105960 tttaaaaacttatgtattaat 10105940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 10228505 - 10228376
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatg-----aaatattggtgtggagacaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||||    
T  10228505 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaatgacaaaatgaaatgaaatattggtgtggagacaagat 10228406  T
Q  111 tttaatattttgatgtgtttctctgccctt 140  Q
    ||||||||||||||||||||||||||||||    
T  10228405 tttaatattttgatgtgtttctctgccctt 10228376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 10365207 - 10365311
Alignment:
Q  127 gtttctctgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctaaggattctatatgatatttaaaaactta 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10365207 gtttcactgcccttgaaatttcagtttagtttcacaaatctaaataaaaaatattaagaaaagtcttcgctgaggattctatatgatatttaaaaactta 10365306  T
Q  227 tgtat 231  Q
    |||||    
T  10365307 tgtat 10365311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 10228339 - 10228247
Alignment:
Q  144 atttcagtttagtttcacaaatctaaataaaaaa-tattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10228339 atttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 10228247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 10365154 - 10365196
Alignment:
Q  10 tcgaagaatatgttatcatcagtaacaagtcattgatgaatgg 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  10365154 tcgaacaatatgttatcatcagtaacaagtcattgatgaatgg 10365196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 26801882 - 26801753
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatg-----aaatattggtgtggagacaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||||    
T  26801882 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaatgacaaaatgaaatgaaatattggtgtggagacaagat 26801783  T
Q  111 tttaatattttgatgtgtttctctgccctt 140  Q
    ||||||||||||||||||||||||||||||    
T  26801782 tttaatattttgatgtgtttctctgccctt 26801753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 26809432 - 26809303
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatg-----aaatattggtgtggagacaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||||    
T  26809432 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaatgacaaaatgaaatgaaatattggtgtggagacaagat 26809333  T
Q  111 tttaatattttgatgtgtttctctgccctt 140  Q
    ||||||||||||||||||||||||||||||    
T  26809332 tttaatattttgatgtgtttctctgccctt 26809303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 26824459 - 26824330
Alignment:
Q  16 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaaagacaaaatg-----aaatattggtgtggagacaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||||    
T  26824459 aatatgttatcatcagtaacaagtcattgatgaatggttccaatgtacaaataacaaaagaatgacaaaatgaaatgaaatattggtgtggagacaagat 26824360  T
Q  111 tttaatattttgatgtgtttctctgccctt 140  Q
    ||||||||||||||||||||||||||||||    
T  26824359 tttaatattttgatgtgtttctctgccctt 26824330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 26801716 - 26801624
Alignment:
Q  144 atttcagtttagtttcacaaatctaaataaaaaa-tattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801716 atttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 26801624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 26809266 - 26809174
Alignment:
Q  144 atttcagtttagtttcacaaatctaaataaaaaa-tattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26809266 atttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 26809174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 26824293 - 26824201
Alignment:
Q  144 atttcagtttagtttcacaaatctaaataaaaaa-tattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26824293 atttcagtttagtttcacaaatctaaataaaaaaatattaagaaaagtcttcgctaaggattctatatgatatttaaaaacttatgtattaat 26824201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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