View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_13 (Length: 549)
Name: NF1459_low_13
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Complemental strand, 5351178 - 5350737
Alignment:
| Q |
14 |
cagagatagcaacaaccttaattgctccagccatgttacttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaatcgagtt |
113 |
Q |
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| T |
5351178 |
cagagatagcaacaaccttaattgctccagccatgttatttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaatcgagtt |
5351079 |
T |
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| Q |
114 |
gtgatttggaagagaagggaatgggtatttatacaaatataaatgcaaatgaatggtacggttgaaataattaatgtatatttagatctgtgtggggtat |
213 |
Q |
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| T |
5351078 |
gtgatttggaagagaagggaatgggtatttatacaaatataaatgcaaatgaatggtacggttgaaataattaatgtatatttagatctgtgtggggtat |
5350979 |
T |
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| Q |
214 |
gcttatggtccaaggtatcgaattaaattcgagattgggggcttttaaaatcaagacaaaattggaagtgatgttatgcattacgtagtgctgatcacat |
313 |
Q |
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| T |
5350978 |
gcttatggtccaaggtatcgaattaaattcgggattgggggcttttaaaatcaagacaagattggaagtgatgttatgcattacgtagtgctgatcacat |
5350879 |
T |
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| Q |
314 |
gaaaaaagtgttcaacgaagac-aagttgcatgaaaatggaaaaagacttgtgacgttaatggtctaacttgattggagagatattttcccctatcaaca |
412 |
Q |
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| T |
5350878 |
gaaaaaagtgttcaacgaagacaaagttgcatgaaaatggaaaaagacttgtgacgttaatggtctaacttgatgggagagatattttaccctatcaaca |
5350779 |
T |
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| Q |
413 |
aattgacacgttcggagaggaatagtttaacatagtttatgt |
454 |
Q |
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| T |
5350778 |
aattgacacgttcggagaggaatagtttaagatagtttatgt |
5350737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 232 - 372
Target Start/End: Complemental strand, 5343210 - 5343076
Alignment:
| Q |
232 |
cgaattaaattcgagattgggggcttttaaaatcaagacaaaattggaagtgatgttatgcattacgtagtgctgatcacatgaaaaaagtgttcaacga |
331 |
Q |
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| T |
5343210 |
cgaattaaattcgagattgggggcttttaaaatgaaga-----ttgtaagtgatgttatgcattacgtagtgctgatgacatgaaaaaggattt-agcaa |
5343117 |
T |
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| Q |
332 |
agacaagttgcatgaaaatggaaaaagacttgtgacgttaa |
372 |
Q |
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| T |
5343116 |
agacaagttgcatgcgaatggaaaaagacttcagacgttaa |
5343076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 5343504 - 5343417
Alignment:
| Q |
26 |
caaccttaattgctccagccatgttacttgttaatcaatgtggcaaatgttgtaaatgtaaaatgtaatgtgatttgtgaatcgagttgtgattt |
120 |
Q |
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| T |
5343504 |
caaccttaattatcccagccatgttttttgtgaatcaatgtggcaaatgttgt-------atatgtgatgtgatttgtgaattgagttgtgattt |
5343417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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