View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_133 (Length: 248)
Name: NF1459_low_133
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_133 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35373498 - 35373738
Alignment:
| Q |
1 |
catgctctagaagtattgtaattatttttcttcagaaaaaagtataattattttttaaaatatgttctactagatacatatatctgatacttcaaagaaa |
100 |
Q |
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| T |
35373498 |
catgctctacaagtatcgtaattatttttattcagaaaaaagtataattattttttaaaatatattctactagatacatatatctgatacttcaaagaaa |
35373597 |
T |
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| Q |
101 |
gtcgtggatacatttttgaatatgtatctcggattgnnnnnnnnnaaaaaagtcgtaaattactctcaatttattaaggagtaatgtaggcgtcaccgat |
200 |
Q |
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| T |
35373598 |
gttgtggatacatattttaatatgtatctcagatggttttttttaaagaaagtcgtaaattactctcaattcattaaggagtaatgtaggcgtcaccgat |
35373697 |
T |
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| Q |
201 |
aaggttttttcttacaatcaattaccatttattttcatctc |
241 |
Q |
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| T |
35373698 |
aaagtttttttttacaatcaattaccatttattttcatctc |
35373738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 35370231 - 35370321
Alignment:
| Q |
44 |
ataattattttttaaaatatgttctactagatacatatatctgatacttcaaagaaagtcgtggatacatttttgaatatgtatctcggat |
134 |
Q |
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| T |
35370231 |
ataattattttttaaaatatattctgccatatatttatatatgatacttcaaagaaagttgcggatacatatttgaatatgtatctaggat |
35370321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 38576882 - 38576819
Alignment:
| Q |
167 |
caatttattaaggagtaatgtaggcgtcaccgataaggttttttcttacaatcaattaccattt |
230 |
Q |
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| T |
38576882 |
caattcataaaggggtaatgtaggcctcatcgataaggttttttcttacaatcagttaccattt |
38576819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 27651440 - 27651391
Alignment:
| Q |
181 |
gtaatgtaggcgtcaccgataaggttttttcttacaatcaattaccattt |
230 |
Q |
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| T |
27651440 |
gtaatgtagacctcaccgatagggttttttcttacaatcaattatcattt |
27651391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 25062438 - 25062510
Alignment:
| Q |
155 |
gtaaattactctcaatttattaaggagtaatgtaggcgtcaccgataaggtttt-ttcttacaatcaattacc |
226 |
Q |
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| T |
25062438 |
gtaaattaccctcaattcatcaaggaataatgtaggcttcaccaatttggtttttttcttacaatcaattacc |
25062510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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