View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_137 (Length: 246)
Name: NF1459_low_137
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_137 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 10355411 - 10355618
Alignment:
| Q |
24 |
gcaaaccattacgatatgtggcattattctattatctaaataaccaaccaactttctgtnnnnnnnn-taaccaaccaaacaattattttagttaaagat |
122 |
Q |
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| T |
10355411 |
gcaaaccattacgagatgtggcattattccattacctaaataaccaaccaactttctgtaaaaaaaaataaccaaccaaacaattattttagttaaagat |
10355510 |
T |
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| Q |
123 |
atttccagatctaattatctttctaacaaacatctaagcaaacttgaagtcgtcttcatgattttcctcaacaactctagagcccctgagtgttcccctt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
10355511 |
atttccagatctaattatctttctaacaaacatctaagcaaacttgaagtcgtcttcatgattttcctcaacaactctagagcacctgagtgttcacctt |
10355610 |
T |
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| Q |
223 |
atcgagta |
230 |
Q |
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||| |||| |
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| T |
10355611 |
atcaagta |
10355618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 10350986 - 10351092
Alignment:
| Q |
91 |
taaccaaccaaacaattattttagttaaagatatttccagatctaattatctttctaacaaacatctaagcaaacttgaagtcgtcttcatgattttcct |
190 |
Q |
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| T |
10350986 |
taaccaaccaa-caattattttagtaaaagatatttcaagatttaattatctttttaacaaacttctaaggaaacttgaagtcgtcttcatgattttcct |
10351084 |
T |
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| Q |
191 |
caacaact |
198 |
Q |
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|||||||| |
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| T |
10351085 |
caacaact |
10351092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 10350949 - 10350997
Alignment:
| Q |
27 |
aaccattacgatatgtggcattattctattatctaaataaccaaccaac |
75 |
Q |
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| T |
10350949 |
aaccattacgatgtgtggcattattccattacctaaataaccaaccaac |
10350997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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