View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_141 (Length: 242)

Name: NF1459_low_141
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_141
NF1459_low_141
[»] chr3 (17 HSPs)
chr3 (18-207)||(25872215-25872402)
chr3 (200-242)||(34279859-34279901)
chr3 (207-242)||(25641644-25641679)
chr3 (207-242)||(28048541-28048576)
chr3 (207-242)||(47511078-47511113)
chr3 (207-242)||(49130576-49130611)
chr3 (207-242)||(51224175-51224210)
chr3 (207-242)||(51415967-51416002)
chr3 (207-242)||(54707358-54707393)
chr3 (208-242)||(20754542-20754576)
chr3 (208-242)||(41635938-41635972)
chr3 (208-242)||(42589829-42589863)
chr3 (208-242)||(47809746-47809780)
chr3 (209-242)||(38156770-38156803)
chr3 (210-242)||(31286931-31286963)
chr3 (206-242)||(44222826-44222862)
chr3 (202-242)||(51102527-51102567)
[»] chr5 (12 HSPs)
chr5 (201-242)||(42247920-42247961)
chr5 (198-242)||(1402643-1402687)
chr5 (207-242)||(13957668-13957703)
chr5 (207-242)||(19295728-19295763)
chr5 (207-242)||(27503377-27503412)
chr5 (208-242)||(9424730-9424764)
chr5 (208-242)||(33617584-33617618)
chr5 (208-242)||(35626037-35626071)
chr5 (208-242)||(36365583-36365617)
chr5 (209-242)||(6973063-6973096)
chr5 (210-242)||(9374640-9374672)
chr5 (210-242)||(38015652-38015684)
[»] chr1 (17 HSPs)
chr1 (207-242)||(4243628-4243663)
chr1 (207-242)||(3611134-3611169)
chr1 (207-242)||(10928065-10928100)
chr1 (207-242)||(26472317-26472352)
chr1 (207-242)||(29770668-29770703)
chr1 (207-242)||(33073209-33073244)
chr1 (207-242)||(42234838-42234873)
chr1 (207-242)||(51057069-51057104)
chr1 (200-242)||(30290048-30290090)
chr1 (200-242)||(31307992-31308034)
chr1 (208-242)||(41467770-41467804)
chr1 (209-242)||(6626162-6626195)
chr1 (209-242)||(13281700-13281733)
chr1 (209-242)||(34752452-34752485)
chr1 (209-242)||(46428391-46428424)
chr1 (210-242)||(50774218-50774250)
chr1 (198-242)||(51155727-51155771)
[»] chr7 (21 HSPs)
chr7 (208-242)||(43489218-43489252)
chr7 (206-242)||(36816983-36817019)
chr7 (206-242)||(46898154-46898190)
chr7 (207-242)||(24228540-24228575)
chr7 (207-242)||(25894066-25894101)
chr7 (207-242)||(32556744-32556779)
chr7 (207-242)||(44003508-44003543)
chr7 (207-242)||(46817559-46817594)
chr7 (199-242)||(47906897-47906940)
chr7 (208-242)||(21718117-21718151)
chr7 (208-242)||(24923162-24923196)
chr7 (208-242)||(26579866-26579900)
chr7 (208-242)||(29610635-29610669)
chr7 (208-242)||(35752172-35752206)
chr7 (208-242)||(39323616-39323650)
chr7 (208-242)||(48085858-48085892)
chr7 (200-242)||(48609826-48609868)
chr7 (207-240)||(44659843-44659876)
chr7 (207-239)||(25037649-25037681)
chr7 (206-242)||(33839864-33839900)
chr7 (210-242)||(39866667-39866699)
[»] chr4 (21 HSPs)
chr4 (198-242)||(43890917-43890961)
chr4 (207-242)||(3293161-3293196)
chr4 (207-242)||(11972267-11972302)
chr4 (207-242)||(37239228-37239263)
chr4 (207-242)||(54216874-54216909)
chr4 (208-242)||(3692359-3692393)
chr4 (208-242)||(9998069-9998103)
chr4 (208-242)||(15060427-15060461)
chr4 (208-242)||(27873686-27873720)
chr4 (208-242)||(34552318-34552352)
chr4 (209-242)||(5117576-5117609)
chr4 (209-242)||(34276547-34276580)
chr4 (207-240)||(47662253-47662286)
chr4 (209-242)||(47811906-47811939)
chr4 (207-240)||(54216311-54216344)
chr4 (209-242)||(54715035-54715068)
chr4 (206-242)||(14017523-14017559)
chr4 (206-242)||(17555635-17555671)
chr4 (210-242)||(20351980-20352012)
chr4 (198-242)||(31881452-31881496)
chr4 (208-240)||(33289702-33289734)
[»] chr2 (15 HSPs)
chr2 (202-242)||(2000475-2000515)
chr2 (207-242)||(2688867-2688902)
chr2 (207-242)||(12333633-12333668)
chr2 (207-242)||(21735038-21735073)
chr2 (207-242)||(39103044-39103079)
chr2 (208-242)||(28641430-28641464)
chr2 (208-242)||(40635216-40635250)
chr2 (208-242)||(43356097-43356131)
chr2 (209-242)||(145281-145314)
chr2 (207-240)||(40544216-40544249)
chr2 (210-242)||(27331298-27331330)
chr2 (210-242)||(33427796-33427828)
chr2 (210-242)||(35158188-35158220)
chr2 (210-242)||(39301335-39301367)
chr2 (208-240)||(43899110-43899142)
[»] chr8 (11 HSPs)
chr8 (207-242)||(2379138-2379173)
chr8 (207-242)||(3490537-3490572)
chr8 (207-242)||(10378307-10378342)
chr8 (207-242)||(27243277-27243312)
chr8 (207-242)||(27254852-27254887)
chr8 (208-242)||(4447433-4447467)
chr8 (208-242)||(9713688-9713722)
chr8 (208-242)||(31940314-31940348)
chr8 (208-242)||(41843252-41843286)
chr8 (210-242)||(117467-117499)
chr8 (210-242)||(42701439-42701471)
[»] chr6 (3 HSPs)
chr6 (207-242)||(13329379-13329414)
chr6 (207-242)||(28948983-28949018)
chr6 (210-242)||(3291009-3291041)
[»] scaffold0721 (1 HSPs)
scaffold0721 (208-242)||(7089-7123)
[»] scaffold0271 (1 HSPs)
scaffold0271 (208-242)||(17905-17939)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 25872402 - 25872215
Alignment:
Q  18 attcgaattgctgattattttaactatttgaatgctaaagaagaaaaaagaaatcattaaagaacaagttatttatggacttttgaagttatagggacca 117  Q
    ||||||||||||||||  |||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25872402 attcgaattgctgatt--tttaaccatttgaatgctaatgaagaaaaaaataatcattaaagaacaagttatttatggacttttgaatttatagggacca 25872305  T
Q  118 cattgtctcttttgtgatggtggtaggaccaagttgtcatggattaaaagttgatttttgggtctgagttttttcgatggattaaaatga 207  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25872304 cactgtctcttttgtgacggtggtaggaccaagttgtcatggattaaaagttgatttttgggtctgagttttatcgatggattaaaatga 25872215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 34279901 - 34279859
Alignment:
Q  200 taaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  34279901 taaaataaggttttttctaaattacctttgaagaatggtgggt 34279859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 25641644 - 25641679
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  25641644 aggttttttctaaattacctttgaagaatggtgggt 25641679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 28048576 - 28048541
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28048576 aggttttttctaaattacctttgaagaatggtgggt 28048541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 47511113 - 47511078
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47511113 aggttttttctaaattacctttgaaaaatggtgggt 47511078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 49130576 - 49130611
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49130576 aggttttttctaaattacctttgaaaaatggtgggt 49130611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 51224210 - 51224175
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  51224210 aggttttttctaaattacctttgaagaatggtgggt 51224175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 51415967 - 51416002
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  51415967 aggttttttctaaattacctttgaagaatggtgggt 51416002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 54707393 - 54707358
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  54707393 aggttttttctaaattacctttgaagaatggtgggt 54707358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 20754576 - 20754542
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  20754576 ggttttttctaaattacctttgaagaatggtgggt 20754542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 41635972 - 41635938
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  41635972 ggttttttctaaattacctttgaagaatggtgggt 41635938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 42589829 - 42589863
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  42589829 ggttttttctaaattacctttgaagaatggtgggt 42589863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 47809780 - 47809746
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  47809780 ggttttttctaaattacctttgaagaatggtgggt 47809746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 38156803 - 38156770
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  38156803 gttttttctaaattacctttgaagaatggtgggt 38156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 31286963 - 31286931
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  31286963 ttttttctaaattacctttgaagaatggtgggt 31286931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 44222826 - 44222862
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  44222826 gaggttttttctaaattacctttgaaaaatagtgggt 44222862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 51102567 - 51102527
Alignment:
Q  202 aaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||| |||||||||||| |||||||||||| ||||||||||    
T  51102567 aaataaggttttttctagattacctttgaagaatggtgggt 51102527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 42247961 - 42247920
Alignment:
Q  201 aaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  42247961 aaaatgaggttttttctaaattacctttgaagaatggtgggt 42247920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 1402687 - 1402643
Alignment:
Q  198 attaaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||    
T  1402687 attaaattgaggttttttctagattacctttgaaaaatggtgggt 1402643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 13957668 - 13957703
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13957668 aggttttttctaaattacctttgaagaatggtgggt 13957703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 19295728 - 19295763
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  19295728 aggttttttctaaattacctttgaaaaatggtgggt 19295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 27503377 - 27503412
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27503377 aggttttttctaaattacctttgaagaatggtgggt 27503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 9424764 - 9424730
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  9424764 ggttttttctaaattacctttgaagaatggtgggt 9424730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 33617584 - 33617618
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  33617584 ggttttttctaaattacctttgaaaaatggtgggt 33617618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 35626037 - 35626071
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  35626037 ggttttttctaaattacctttgaagaatggtgggt 35626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 36365617 - 36365583
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  36365617 ggttttttctaaattacctttgaagaatggtgggt 36365583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 6973063 - 6973096
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  6973063 gttttttctaaattacctttgaagaatggtgggt 6973096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 9374672 - 9374640
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  9374672 ttttttctaaattacctttgaaaaatggtgggt 9374640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 38015684 - 38015652
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  38015684 ttttttctaaattacctttgaagaatggtgggt 38015652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 4243663 - 4243628
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  4243663 aggttttttctaaattacctttgaataatggtgggt 4243628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 3611134 - 3611169
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3611134 aggttttttctaaattacctttgaagaatggtgggt 3611169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 10928065 - 10928100
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10928065 aggttttttctaaattacctttgaaaaatggtgggt 10928100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 26472352 - 26472317
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26472352 aggttttttctaaattacctttgaagaatggtgggt 26472317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 29770668 - 29770703
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29770668 aggttttttctaaattacctttgaagaatggtgggt 29770703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 33073209 - 33073244
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33073209 aggttttttctaaattacctttgaaaaatggtgggt 33073244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 42234838 - 42234873
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42234838 aggttttttctaaattacctttgaagaatggtgggt 42234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 51057069 - 51057104
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  51057069 aggttttttctaaattacctttgaagaatggtgggt 51057104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 30290090 - 30290048
Alignment:
Q  200 taaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| |||| |||||||||||||||||||| ||||||||||    
T  30290090 taaaattaggtgttttctaaattacctttgaaaaatggtgggt 30290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 31307992 - 31308034
Alignment:
Q  200 taaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  31307992 taaaattaggttttttctagattacctttgaagaatggtgggt 31308034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 41467804 - 41467770
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  41467804 ggttttttctaaattacctttgaagaatggtgggt 41467770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 6626195 - 6626162
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  6626195 gttttttctaaattacctttgaagaatggtgggt 6626162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 13281733 - 13281700
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  13281733 gttttttctaaattacctttgaagaatggtgggt 13281700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 34752485 - 34752452
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  34752485 gttttttctaaattacctttgaagaatggtgggt 34752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 46428424 - 46428391
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  46428424 gttttttctaaattacctttgaaaaatggtgggt 46428391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 50774218 - 50774250
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  50774218 ttttttctaaattacctttgaagaatggtgggt 50774250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 51155771 - 51155727
Alignment:
Q  198 attaaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||  |||||||||||||||||||||||| |||| |||||    
T  51155771 attaaaatagggttttttctaaattacctttgaaaaatgatgggt 51155727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 43489218 - 43489252
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  43489218 ggttttttctaaattacctttgaataatggtgggt 43489252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 36817019 - 36816983
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||||| ||||||||||    
T  36817019 gaggttttttctaaattacctttgaagaatggtgggt 36816983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 46898190 - 46898154
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||||| ||||||||||    
T  46898190 gaggttttttctaaattacctttgaaaaatggtgggt 46898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 24228540 - 24228575
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  24228540 aggttttttctaaattacctttgaagaatggtgggt 24228575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 25894101 - 25894066
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  25894101 aggttttttctaaattacctttgaagaatggtgggt 25894066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 32556779 - 32556744
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32556779 aggttttttctaaattacctttgaagaatggtgggt 32556744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 44003543 - 44003508
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44003543 aggttttttctaaattacctttgaaaaatggtgggt 44003508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 46817594 - 46817559
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  46817594 aggttttttctaaattacctttgaagaatggtgggt 46817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 47906940 - 47906897
Alignment:
Q  199 ttaaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||  |||||||||||||||||||||||| ||||||||||    
T  47906940 ttaaaatatggttttttctaaattacctttgaagaatggtgggt 47906897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 21718117 - 21718151
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||||| |||||||    
T  21718117 ggttttttctaaattacctttgaataacggtgggt 21718151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 24923196 - 24923162
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  24923196 ggttttttctaaattacctttgaagaatggtgggt 24923162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 26579900 - 26579866
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  26579900 ggttttttctaaattacctttgaagaatggtgggt 26579866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 29610635 - 29610669
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  29610635 ggttttttctaaattacctttgaagaatggtgggt 29610669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 35752206 - 35752172
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  35752206 ggttttttctaaattacctttgaagaatggtgggt 35752172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 39323616 - 39323650
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  39323616 ggttttttctaaattacctttgaagaatggtgggt 39323650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 48085858 - 48085892
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  48085858 ggttttttctaaattacctttgaagaatggtgggt 48085892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 48609868 - 48609826
Alignment:
Q  200 taaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  48609868 taaaataaggttttttctagattacctttgaagaatggtgggt 48609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 44659843 - 44659876
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgg 240  Q
    ||||||||||||||||||||||||| ||||||||    
T  44659843 aggttttttctaaattacctttgaagaatggtgg 44659876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 25037681 - 25037649
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtg 239  Q
    ||||||||||||||||||||||||| |||||||    
T  25037681 aggttttttctaaattacctttgaagaatggtg 25037649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 33839900 - 33839864
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  33839900 gaggttttttctagattacctttgaagaatggtgggt 33839864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 39866667 - 39866699
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  39866667 ttttttctaaattacctttgaagaatggtgggt 39866699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 43890917 - 43890961
Alignment:
Q  198 attaaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||    
T  43890917 attaaattgagtttttttctaaattacctttgaaaaatggtgggt 43890961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 3293196 - 3293161
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3293196 aggttttttctaaattacctttgaaaaatggtgggt 3293161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 11972302 - 11972267
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11972302 aggttttttctaaattacctttgaagaatggtgggt 11972267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 37239263 - 37239228
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37239263 aggttttttctaaattacctttgaagaatggtgggt 37239228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 54216909 - 54216874
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  54216909 aggttttttctaaattacctttgaaaaatggtgggt 54216874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 3692393 - 3692359
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||| |||||||||||||||||||||||    
T  3692393 ggttttttctagattacctttgaataatggtgggt 3692359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 9998103 - 9998069
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  9998103 ggttttttctaaattacctttgaaaaatggtgggt 9998069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 15060461 - 15060427
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  15060461 ggttttttctaaattacctttgaagaatggtgggt 15060427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 27873720 - 27873686
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  27873720 ggttttttctaaattacctttgaagaatggtgggt 27873686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 34552318 - 34552352
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  34552318 ggttttttctaaattacctttgaagaatggtgggt 34552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 5117609 - 5117576
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  5117609 gttttttctaaattacctttgaagaatggtgggt 5117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 34276547 - 34276580
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  34276547 gttttttctaaattacctttgaagaatggtgggt 34276580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 47662286 - 47662253
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgg 240  Q
    |||||||||||| |||||||||||||||||||||    
T  47662286 aggttttttctagattacctttgaataatggtgg 47662253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 47811906 - 47811939
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  47811906 gttttttctaaattacctttgaaaaatggtgggt 47811939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 54216311 - 54216344
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgg 240  Q
    ||||||||||||||||||||||||| ||||||||    
T  54216311 aggttttttctaaattacctttgaagaatggtgg 54216344  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 54715035 - 54715068
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  54715035 gttttttctaaattacctttgaaaaatggtgggt 54715068  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 14017559 - 14017523
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  14017559 gaggttttttctagattacctttgaagaatggtgggt 14017523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 17555671 - 17555635
Alignment:
Q  206 gaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  17555671 gaggttttttctagattacctttgaagaatggtgggt 17555635  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 20352012 - 20351980
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  20352012 ttttttctaaattacctttgaagaatggtgggt 20351980  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 31881496 - 31881452
Alignment:
Q  198 attaaaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||  ||||||||||||||||||| |||| ||||||||||    
T  31881496 attaaaatatggttttttctaaattacctatgaagaatggtgggt 31881452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 33289702 - 33289734
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgg 240  Q
    |||||||||||||||||||||||| ||||||||    
T  33289702 ggttttttctaaattacctttgaagaatggtgg 33289734  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 2000515 - 2000475
Alignment:
Q  202 aaatgaggttttttctaaattacctttgaataatggtgggt 242  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  2000515 aaataaggttttttctaaattacctttgaagaatggtgggt 2000475  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 2688902 - 2688867
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2688902 aggttttttctaaattacctttgaagaatggtgggt 2688867  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 12333668 - 12333633
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12333668 aggttttttctaaattacctttgaagaatggtgggt 12333633  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 21735073 - 21735038
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21735073 aggttttttctaaattacctttgaaaaatggtgggt 21735038  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 39103044 - 39103079
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39103044 aggttttttctaaattacctttgaaaaatggtgggt 39103079  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 28641464 - 28641430
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  28641464 ggttttttctaaattacctttgaagaatggtgggt 28641430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 40635216 - 40635250
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  40635216 ggttttttctaaattacctttgaagaatggtgggt 40635250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 43356097 - 43356131
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  43356097 ggttttttctaaattacctttgaagaatggtgggt 43356131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 145281 - 145314
Alignment:
Q  209 gttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  145281 gttttttctaaattacctttgaagaatggtgggt 145314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 40544249 - 40544216
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgg 240  Q
    ||||||||||||||||||||||||| ||||||||    
T  40544249 aggttttttctaaattacctttgaagaatggtgg 40544216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 27331298 - 27331330
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  27331298 ttttttctaaattacctttgaagaatggtgggt 27331330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 33427828 - 33427796
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||| |||||||||||||||||||||||    
T  33427828 ttttttctagattacctttgaataatggtgggt 33427796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 35158220 - 35158188
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  35158220 ttttttctaaattacctttgaagaatggtgggt 35158188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 39301367 - 39301335
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  39301367 ttttttctaaattacctttgaagaatggtgggt 39301335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 43899142 - 43899110
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgg 240  Q
    |||||||||||||||||||||||| ||||||||    
T  43899142 ggttttttctaaattacctttgaaaaatggtgg 43899110  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 2379138 - 2379173
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2379138 aggttttttctaaattacctttgaagaatggtgggt 2379173  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 3490572 - 3490537
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3490572 aggttttttctaaattacctttgaaaaatggtgggt 3490537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 10378307 - 10378342
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10378307 aggttttttctaaattacctttgaaaaatggtgggt 10378342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 27243312 - 27243277
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27243312 aggttttttctaaattacctttgaagaatggtgggt 27243277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 27254887 - 27254852
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27254887 aggttttttctaaattacctttgaagaatggtgggt 27254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 4447467 - 4447433
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  4447467 ggttttttctaaattacctttgaaaaatggtgggt 4447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 9713688 - 9713722
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  9713688 ggttttttctaaattacctttgaagaatggtgggt 9713722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 31940314 - 31940348
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  31940314 ggttttttctaaattacctttgaagaatggtgggt 31940348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 41843252 - 41843286
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  41843252 ggttttttctaaattacctttgaaaaatggtgggt 41843286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 117499 - 117467
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  117499 ttttttctaaattacctttgaagaatggtgggt 117467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 42701471 - 42701439
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||| |||||||||||||||||||||||    
T  42701471 ttttttctagattacctttgaataatggtgggt 42701439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 13329379 - 13329414
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13329379 aggttttttctaaattacctttgaagaatggtgggt 13329414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 28949018 - 28948983
Alignment:
Q  207 aggttttttctaaattacctttgaataatggtgggt 242  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28949018 aggttttttctaaattacctttgaagaatggtgggt 28948983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 3291009 - 3291041
Alignment:
Q  210 ttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  3291009 ttttttctaaattacctttgaagaatggtgggt 3291041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 7089 - 7123
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  7089 ggttttttctaaattacctttgaagaatggtgggt 7123  T

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Target: scaffold0271 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 17905 - 17939
Alignment:
Q  208 ggttttttctaaattacctttgaataatggtgggt 242  Q
    |||||||||||||||||||||||| ||||||||||    
T  17905 ggttttttctaaattacctttgaaaaatggtgggt 17939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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