View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_143 (Length: 240)

Name: NF1459_low_143
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_143
NF1459_low_143
[»] chr4 (1 HSPs)
chr4 (1-151)||(25725344-25725491)
[»] chr2 (2 HSPs)
chr2 (1-107)||(4879380-4879485)
chr2 (1-50)||(3204261-3204310)
[»] chr8 (2 HSPs)
chr8 (1-107)||(31713720-31713823)
chr8 (1-124)||(9277513-9277633)
[»] chr3 (2 HSPs)
chr3 (1-50)||(18744857-18744906)
chr3 (4-48)||(48635465-48635509)
[»] chr6 (1 HSPs)
chr6 (1-50)||(19404787-19404836)
[»] chr7 (1 HSPs)
chr7 (1-44)||(25904407-25904450)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 25725344 - 25725491
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttgagtcaaactttacatatggatctatgttgttaagccccctttcatggttca 100  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| | |||| |||||||    
T  25725344 atagattaaaatatgaatatctggtggaaagtgatgtgaaaattct--gagtcaaactttacatatggatctatgtcgttaagcctcttttc-tggttca 25725440  T
Q  101 cttttgtgcttttatcaaatgacaatcagaatagagaagatgatgggaaat 151  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  25725441 cttttgtgtttttatcaaatgacaattagaatagagaagatgatggaaaat 25725491  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4879380 - 4879485
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttgagtcaaactttacatatggatctatgttgttaagccccctttcatggttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  4879380 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttgagtcaaactttacatatagatctatgttgttaag-ccccttttatggttca 4879478  T
Q  101 cttttgt 107  Q
    |||||||    
T  4879479 cttttgt 4879485  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3204310 - 3204261
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttga 50  Q
    ||||||| |||||||||| |||  ||||||||||||||||||||| ||||    
T  3204310 atagattcaaatatgaatctctgctgtgaagtgatgtgaaaattcattga 3204261  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31713720 - 31713823
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttgagtcaaactttacatatggatctatgttgttaagccccctttcatggttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  31713720 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattc--tgagtcaaactttacatatggatctatgttgttaag-ccccttttatggttca 31713816  T
Q  101 cttttgt 107  Q
    |||||||    
T  31713817 cttttgt 31713823  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 9277513 - 9277633
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttgagtcaaactttacatatggatctatgttgttaagccccctttcatggttca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| | |||||||| |||| || ||||    
T  9277513 atagattaaaatatgaatatctagtgggaagtgatgtgaaaat--tttgagtcaaactttacatatggatctatgtcgctaagccccttttc-tgattca 9277609  T
Q  101 cttttgtgcttttatcaaatgaca 124  Q
    |||||||| |||||||||||||||    
T  9277610 cttttgtgtttttatcaaatgaca 9277633  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18744857 - 18744906
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttga 50  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  18744857 atagattaaaatttgaatctctggtgtgaagtgatgtgaaaattctttga 18744906  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 48635465 - 48635509
Alignment:
Q  4 gattaaaatatgaatatctagtgtgaagtgatgtgaaaattcttt 48  Q
    ||||||||| |||||  || |||||||||||||||||||||||||    
T  48635465 gattaaaatttgaatccctggtgtgaagtgatgtgaaaattcttt 48635509  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19404836 - 19404787
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaattctttga 50  Q
    |||| ||||||| ||||| | |||||||||||||||||||||||||||||    
T  19404836 ataggttaaaatttgaatctttagtgtgaagtgatgtgaaaattctttga 19404787  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25904450 - 25904407
Alignment:
Q  1 atagattaaaatatgaatatctagtgtgaagtgatgtgaaaatt 44  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  25904450 atagattaaaatatgaatccctattgtgaagtgatgtgaaaatt 25904407  T

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