View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_151 (Length: 235)

Name: NF1459_low_151
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_151
NF1459_low_151
[»] chr8 (1 HSPs)
chr8 (20-205)||(40862865-40863050)
[»] chr4 (2 HSPs)
chr4 (131-181)||(831567-831617)
chr4 (136-205)||(10459824-10459893)
[»] chr2 (1 HSPs)
chr2 (131-196)||(25376378-25376443)
[»] chr1 (1 HSPs)
chr1 (136-185)||(50646235-50646284)
[»] chr6 (1 HSPs)
chr6 (127-182)||(16470878-16470933)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 40863050 - 40862865
Alignment:
Q  20 caacctgccatccactgaatagggaggtagtcgatggaaaggttaagagactaagatcaactatttgtttattctcgtaaatgtattgagaaattacgag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40863050 caacctgccatccactgaatagggaggtagtcgatggaaaggttaagagactaagatcaactatttgtttattctcgtaaatgtattgagaaattacgag 40862951  T
Q  120 gtttgaattttgtttggatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttttaaaaacttgtcaaggcacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40862950 gtttgaattttgtttggatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttttaaaaacttgttaaggcacc 40862865  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 831617 - 831567
Alignment:
Q  131 gtttggatttattgagatgcttttgaacgaagtaacgatcagagatgagag 181  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  831617 gtttcgatttcttgagatgcttttgaacgaagtaaggatcagagatgagag 831567  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 10459893 - 10459824
Alignment:
Q  136 gatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttttaaaaacttgtcaaggcacc 205  Q
    ||||| ||||||||| |||||||||||||| |||| |||| |||||| || ||||| |||| || |||||    
T  10459893 gatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgttaacgcacc 10459824  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 25376443 - 25376378
Alignment:
Q  131 gtttggatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttttaaaaacttgt 196  Q
    |||| ||||||||| ||||| |||||||||||| | |||| |||||||||||||| ||||||||||    
T  25376443 gttttgatttattgcgatgcatttgaacgaagtgaggatcggagatgagagttttgaaaaacttgt 25376378  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 50646235 - 50646284
Alignment:
Q  136 gatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttt 185  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  50646235 gatttcttgagatgcatttgaacgaagtaaggatcagagatgagagtttt 50646284  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 16470878 - 16470933
Alignment:
Q  127 ttttgtttggatttattgagatgcttttgaacgaagtaacgatcagagatgagagt 182  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  16470878 ttttgtttcgattttttgagatgcatttgaacgaagtaaggatcaaagatgagagt 16470933  T

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