View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_152 (Length: 234)
Name: NF1459_low_152
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24947255 - 24947439
Alignment:
| Q |
1 |
acataaacactagagaatcaaataaataagtactattgaaaggtataagtaaaacattaacaagtatatggaaattgggactatatccaaatagacgcaa |
100 |
Q |
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| T |
24947255 |
acataaacactagggaatcaaataaataagtactattgaaagctataagtaaaacattaacaagtatgtggaaattgggactatatccaaatagacgcga |
24947354 |
T |
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| Q |
101 |
gagttacagtaaatgaatgaactcacgagctaagatagaataggattgaaagcattatcgatttagttagggaagcacctattaa |
185 |
Q |
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| T |
24947355 |
gagttacagtaaatgaatgaactcacgagtcaagatagaataggattgaaagcattattgatttagttaggcaagcacctattaa |
24947439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 24942690 - 24942738
Alignment:
| Q |
3 |
ataaacactagagaatcaaataaataagtactattgaaaggtataagta |
51 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
24942690 |
ataaacactaaagaatcaaataaataagtactattgaaagttgtaagta |
24942738 |
T |
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