View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_155 (Length: 232)
Name: NF1459_low_155
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_155 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 22696090 - 22695877
Alignment:
| Q |
5 |
attttatatataggttgtgactcctctggcaaaatatgccttaacattattgcctattgcatcaagcatagaggaacttgtcccttctcctaggctaaga |
104 |
Q |
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| T |
22696090 |
attttacatataggttgtgactcctctggcaaaatatgccttaacattattgcctattgcatcaagcatagaggaacttgtcccttctcctaggctaaga |
22695991 |
T |
|
| Q |
105 |
tgttatcctatgtctattctcatcagaacagctttagtgctttcaagtttacttgtggccctctcttttccatattttggtaagtattgtcatgccatta |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
22695990 |
tgttatcctatgtctattctcatcagaacagctttagtggtttcaagtttagttgtggccctctcttttccatattttggtaagttttgtcataccatta |
22695891 |
T |
|
| Q |
205 |
ttactacctttgtg |
218 |
Q |
| |
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|||||||||||||| |
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| T |
22695890 |
ttactacctttgtg |
22695877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 22684794 - 22684578
Alignment:
| Q |
6 |
ttttatatataggttgtgactcctctggcaaaatatgccttaacattattgcctattgcatcaagcatagaggaacttgtc---ccttctcctaggctaa |
102 |
Q |
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|||||| ||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22684794 |
ttttatttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaa |
22684695 |
T |
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| Q |
103 |
gatgttatcctatgtctattctcatcagaacagctttagtgctttcaagtttacttgtggccctctcttttccatattttggtaagtattgt-catgcca |
201 |
Q |
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|||||||| |||||||| || | || | |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | | |
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| T |
22684694 |
gatgttatgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatacta |
22684595 |
T |
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| Q |
202 |
ttattactacctttgtg |
218 |
Q |
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||||||||||||||||| |
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| T |
22684594 |
ttattactacctttgtg |
22684578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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