View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_159 (Length: 227)

Name: NF1459_low_159
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_159
NF1459_low_159
[»] chr7 (6 HSPs)
chr7 (1-227)||(23755155-23755384)
chr7 (1-67)||(23779051-23779117)
chr7 (1-58)||(23753307-23753364)
chr7 (108-151)||(31229948-31229991)
chr7 (101-157)||(6737260-6737316)
chr7 (94-138)||(46392612-46392656)
[»] chr8 (1 HSPs)
chr8 (94-157)||(11061001-11061064)
[»] chr4 (1 HSPs)
chr4 (94-152)||(9840412-9840470)
[»] chr2 (1 HSPs)
chr2 (94-152)||(32323677-32323735)
[»] chr1 (1 HSPs)
chr1 (104-152)||(49756665-49756713)
[»] chr3 (1 HSPs)
chr3 (101-148)||(3035581-3035628)
[»] chr6 (2 HSPs)
chr6 (95-157)||(847821-847883)
chr6 (114-152)||(879308-879346)
[»] chr5 (2 HSPs)
chr5 (111-152)||(33239343-33239384)
chr5 (94-147)||(36911164-36911217)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23755384 - 23755155
Alignment:
Q  1 ctatccctaaacgttgcaaccttgctgatcgccccgttggttacaagtgtggacgtaagttactaactactcgctgtcgtttttgtnnnnnnn-ttgttc 99  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||    
T  23755384 ctatccctaagcgttgcaaccttgctgatcgtcccgttggttacaagtgtggacgtaagttactaactactctctgtcgtttttgtaaaaaaaattgttc 23755285  T
Q  100 gtatttatttgttgttttcaaagctcaatgcaagat--taattattgttttgtcagtaatgattttaactatttaagtgaaataaaactataaatagtta 197  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23755284 gtatttatttattgttttcaaagctcaatgcaagatattaattattgttttttcagtaatgattttaactatttaagtgaaataaaactataaatagtta 23755185  T
Q  198 agagtattatagaaaatagatagataaata 227  Q
    |||||||||||||||||||| |||||||||    
T  23755184 agagtattatagaaaatagaaagataaata 23755155  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23779117 - 23779051
Alignment:
Q  1 ctatccctaaacgttgcaaccttgctgatcgccccgttggttacaagtgtggacgtaagttactaac 67  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||||||| ||||||    
T  23779117 ctatccctaaacgctgcaactttgctaatcgccccgttggttataagtgcggacgtaagtaactaac 23779051  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23753364 - 23753307
Alignment:
Q  1 ctatccctaaacgttgcaaccttgctgatcgccccgttggttacaagtgtggacgtaa 58  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||    
T  23753364 ctatccctaagcgttgcaaccttgctgatcgccctgtcggttacaagtgtgggcgtaa 23753307  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 31229991 - 31229948
Alignment:
Q  108 ttgttgttttcaaagctcaatgcaagattaattattgttttgtc 151  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  31229991 ttgttgttttcaaagttcaatacaacattaattattgttttgtc 31229948  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 6737316 - 6737260
Alignment:
Q  101 tatttatttgttgttttcaaagctcaatgcaagattaattattgttttgtcagtaat 157  Q
    ||||||||| |  ||||||||| ||||||||| ||||||||||||||| ||| ||||    
T  6737316 tatttatttatcattttcaaagttcaatgcaatattaattattgttttatcaataat 6737260  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 46392656 - 46392612
Alignment:
Q  94 ttgttcgtatttatttgttgttttcaaagctcaatgcaagattaa 138  Q
    |||||| ||||||||||| |||||||||| ||||||||| |||||    
T  46392656 ttgttcctatttatttgtcgttttcaaagttcaatgcaacattaa 46392612  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 11061001 - 11061064
Alignment:
Q  94 ttgttcgtatttatttgttgttttcaaagctcaatgcaagattaattattgttttgtcagtaat 157  Q
    |||||| ||||||||||| |||||||||| |||||| || ||||||||||||||||||| ||||    
T  11061001 ttgttcctatttatttgtcgttttcaaagttcaatgtaatattaattattgttttgtcaataat 11061064  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 9840470 - 9840412
Alignment:
Q  94 ttgttcgtatttatttgttgttttcaaagctcaatgcaagattaattattgttttgtca 152  Q
    |||||| |||||||||||  ||||||||||||||||||| ||||| |||||||||||||    
T  9840470 ttgttcctatttatttgtctttttcaaagctcaatgcaacattaactattgttttgtca 9840412  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 32323677 - 32323735
Alignment:
Q  94 ttgttcgtatttatttgttgttttcaaagctcaatgcaagattaattattgttttgtca 152  Q
    |||||| | ||||||||| |||||||||| ||||||||| || ||||||||||||||||    
T  32323677 ttgttcctctttatttgtcgttttcaaagttcaatgcaacatcaattattgttttgtca 32323735  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 49756665 - 49756713
Alignment:
Q  104 ttatttgttgttttcaaagctcaatgcaagattaattattgttttgtca 152  Q
    |||||||||||| |||||| ||||||||| | |||||||||||||||||    
T  49756665 ttatttgttgttgtcaaagttcaatgcaacaataattattgttttgtca 49756713  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 3035628 - 3035581
Alignment:
Q  101 tatttatttgttgttttcaaagctcaatgcaagattaattattgtttt 148  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||||||||    
T  3035628 tatttatttgtcgttttcaaagttcaatgcaacattaaatattgtttt 3035581  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 847821 - 847883
Alignment:
Q  95 tgttcgtatttatttgttgttttcaaagctcaatgcaagattaattattgttttgtcagtaat 157  Q
    ||||| |||||| ||||  ||||||||| ||||||||| ||||||||||| ||||||| ||||    
T  847821 tgttcctatttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataat 847883  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 879308 - 879346
Alignment:
Q  114 ttttcaaagctcaatgcaagattaattattgttttgtca 152  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  879308 ttttcaaagttcaatgcaacattaattattgttttgtca 879346  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 33239343 - 33239384
Alignment:
Q  111 ttgttttcaaagctcaatgcaagattaattattgttttgtca 152  Q
    |||||||||||| ||||||||| ||||||| |||||||||||    
T  33239343 ttgttttcaaagttcaatgcaacattaatttttgttttgtca 33239384  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 36911164 - 36911217
Alignment:
Q  94 ttgttcgtatttatttgttgttttcaaagctcaatgcaagattaattattgttt 147  Q
    |||||| ||||||||||||||| |||||| | ||||||| |||| |||||||||    
T  36911164 ttgttcctatttatttgttgttatcaaagtttaatgcaacattagttattgttt 36911217  T

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