View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_16 (Length: 526)
Name: NF1459_low_16
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 47788429 - 47788787
Alignment:
| Q |
13 |
aatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47788429 |
aatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgtagcaat |
47788528 |
T |
|
| Q |
113 |
aggattggtgctagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788529 |
aggattggtgctagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccat |
47788628 |
T |
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| Q |
213 |
gatcatcaacacttttctcgaag--gtaattgtaaggtgagagtgtctctcttcatnnnnnnnnttcaactttatctcttttgagccaatacactctctc |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
47788629 |
gatcatcaacacttttctcgaaggtgtaattgtaaggtgagagtgtctctcttcataaaaaaaattcaactttatctcttttgagccaatatactctctc |
47788728 |
T |
|
| Q |
311 |
atgcccatgattattggatttcgtcttttggtaatttcgtgggtgattcaaatgaataa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47788729 |
atgcccatgattattggatttcgtcttttggtaatttcgtgggtgattcaaatgaataa |
47788787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 47782242 - 47782492
Alignment:
| Q |
13 |
aatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaat |
112 |
Q |
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| T |
47782242 |
aatatatggtcttgttcagtgtacacctgacttgtctggtccacaatgtgatgattgtttgcttcaatctattgctggaatttcaaga---tttagcaat |
47782338 |
T |
|
| Q |
113 |
aggattggtgctagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagcaaaactggcttcgcatctcccat |
212 |
Q |
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|||| | |||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| || ||||||| |
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| T |
47782339 |
aggagtagtgctagaatgattagaccaagctgttatttgaggtttgcaacttcatatcaattctatcaacccaaaccaaaactggcttcccaactcccat |
47782438 |
T |
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| Q |
213 |
gatcatcaacacttttctcgaaggtaattgtaaggtgagagtgtctctcttcat |
266 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47782439 |
gatcaacaacacttttctcgaaggtaattgtaaggtgagaggatctctcttcat |
47782492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 416 - 511
Target Start/End: Original strand, 47788831 - 47788926
Alignment:
| Q |
416 |
cttagtaaatagacttctaaaatgactaatgtcattctttattaattctgagttaaaattcattttgataattcacaatttttctatagactaatt |
511 |
Q |
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| T |
47788831 |
cttagtaaatagacttctaaaatgactaatgtcattctttattaattctgagttaaaattcattttgataattcacaatttttctatagactaatt |
47788926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 47778308 - 47778484
Alignment:
| Q |
14 |
atatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaata |
113 |
Q |
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||||||||||||| ||||||||| ||||| || ||||||||||| |||| |||| ||| | | || ||| | ||| |||||||| |||||| |||| |
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| T |
47778308 |
atatatggtcttgctcagtgtacacctgatttatctggtccacaatgtgccaattgcttgaatgagtctattacagaaatttcaagatgttgtaaaaata |
47778407 |
T |
|
| Q |
114 |
ggattggtgctagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatcaacctaaagca |
190 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
47778408 |
ggattggtgctagaattgttagacctagctgtaatttgaggtttgaaacttcatttcaattctatcaaactatagca |
47778484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 47811744 - 47811918
Alignment:
| Q |
13 |
aatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaat |
112 |
Q |
| |
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|||| ||||||||||||||||||| ||||| ||||| | | ||||||||||||| |||||| | |||| ||||||||||| ||| | ||||| ||| |
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| T |
47811744 |
aataaatggtcttgttcagtgtacacctgatttgtcggtttcacagtgtgatgactgtttgaatgaatctattgctgaagtcccaaaatattgtaccaac |
47811843 |
T |
|
| Q |
113 |
aggattggtgctagaattattagaccaagctgtaatttgaggtttgaaacttcataccaattctatc-aacctaaagc |
189 |
Q |
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| T |
47811844 |
aagattggctgtagagtttttagagcaagctgtaatttgaggtttgaaact---taccaattctatcaaacctaaagc |
47811918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 6521993 - 6522141
Alignment:
| Q |
14 |
atatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagaggttgtagcaata |
113 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||| || ||||||||||||||| ||||||| || ||| |||||| |||||| ||||| |
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| T |
6521993 |
atatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaata |
6522092 |
T |
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| Q |
114 |
ggattggtgctagaattattagaccaagctgtaatttgaggtttgaaac |
162 |
Q |
| |
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|| | |||||||||||| ||||||| || ||||||||||| | |||||| |
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| T |
6522093 |
ggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
6522141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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