View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_160 (Length: 226)
Name: NF1459_low_160
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_160 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1702102 - 1702327
Alignment:
| Q |
1 |
ccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaat |
100 |
Q |
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| T |
1702102 |
ccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaat |
1702201 |
T |
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| Q |
101 |
tctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaatgtcctaatgaaattctgtttggttccac |
200 |
Q |
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| T |
1702202 |
tctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaaattctgtttggttccac |
1702301 |
T |
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| Q |
201 |
tcctaattatcttaatcttggagtct |
226 |
Q |
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| T |
1702302 |
tcctaattatcttaatcttcgagtct |
1702327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 5400844 - 5400962
Alignment:
| Q |
7 |
actcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggt |
106 |
Q |
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| T |
5400844 |
actcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggt |
5400943 |
T |
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| Q |
107 |
gttatgccttccaaatggc |
125 |
Q |
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| T |
5400944 |
gttatgcttttcaaatggc |
5400962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 3541819 - 3541937
Alignment:
| Q |
7 |
actcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggt |
106 |
Q |
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| T |
3541819 |
actcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggt |
3541918 |
T |
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| Q |
107 |
gttatgccttccaaatggc |
125 |
Q |
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| T |
3541919 |
gttatgcttttcaaatggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 26592333 - 26592278
Alignment:
| Q |
4 |
tacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
59 |
Q |
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| T |
26592333 |
tacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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