View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_165 (Length: 222)
Name: NF1459_low_165
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_165 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 40862444 - 40862234
Alignment:
| Q |
1 |
tttcgtgacttcaccatagaattttccttcatattacgattgtttaactaactgctgcatccaaaaattataggaacatcaaccccgttttgtccgacca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40862444 |
tttcgtgacttcactatagaattttccttcatattacgattgtttaactaactgctacatccaaaaattataggaacatcaaccccgttttgtccgacca |
40862345 |
T |
|
| Q |
101 |
ggtatgattttaatcgggcatacaatagttcgcaagcccttcgctacaaaatctctcagtagatatagcactactcataaacatacttagagaggatcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40862344 |
ggtatgattttaatcgggcatacaatagttcgcaagcgcttcgctacaaaatctctcagtagatatagcactactcataaacatacttagggagggtcta |
40862245 |
T |
|
| Q |
201 |
caaagtttcat |
211 |
Q |
| |
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||||||||||| |
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| T |
40862244 |
caaagtttcat |
40862234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 12115614 - 12115750
Alignment:
| Q |
39 |
attgtttaactaactgctgcatccaaaaattataggaacatcaaccccgttttgtccgaccaggtatgattttaatcgggcatacaatagttcgcaagcc |
138 |
Q |
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||||||| | |||||||| ||||||||||||||||||||| |||||||||||| | ||| || | |||||||||| || |||||| |||||||| || | |
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| T |
12115614 |
attgtttgattaactgctacatccaaaaattataggaacaacaaccccgttttttacgagcatgcatgattttaagtggccatacagtagttcgcgaggc |
12115713 |
T |
|
| Q |
139 |
cttcgctacaaaatctctcagtagatatagcactact |
175 |
Q |
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|||| |||||||||||||| ||||||||||||||| |
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| T |
12115714 |
cttcactacaaaatctctcgagagatatagcactact |
12115750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36860449 - 36860421
Alignment:
| Q |
1 |
tttcgtgacttcaccatagaattttcctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
36860449 |
tttcgtgacttcaccatagaattttcctt |
36860421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32821213 - 32821245
Alignment:
| Q |
1 |
tttcgtgacttcaccatagaattttccttcata |
33 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
32821213 |
tttcatgacttcaccatagaattttccttcata |
32821245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 55343443 - 55343471
Alignment:
| Q |
1 |
tttcgtgacttcaccatagaattttcctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
55343443 |
tttcgtgacttcaccatagaattttcctt |
55343471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4166948 - 4166920
Alignment:
| Q |
1 |
tttcgtgacttcaccatagaattttcctt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
4166948 |
tttcgtgacttcaccatagaattttcctt |
4166920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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