View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_166 (Length: 221)
Name: NF1459_low_166
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_166 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 24078410 - 24078580
Alignment:
| Q |
35 |
gtctgataaccgaaaaagaacatctttaacaaacataccagatattttgtccgcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagca |
134 |
Q |
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| T |
24078410 |
gtctgataaccgaaaaagaacatctttaacaaacatacaagatattttgtccacaaaaccaagggtccgaaacagctctacagcttccttgtgatgagca |
24078509 |
T |
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| Q |
135 |
acaacctcaaaaagcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactagacaa |
205 |
Q |
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| T |
24078510 |
acaacctcaaaaagcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactagacaa |
24078580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 16439121 - 16438967
Alignment:
| Q |
48 |
aaaagaacatctttaacaaacataccagatattttgtccgcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaa |
147 |
Q |
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| T |
16439121 |
aaaagaacatctttaacaaacataccggatattttgtcctcgaacccaagggtctgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaa |
16439022 |
T |
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| Q |
148 |
gcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactaga |
202 |
Q |
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| T |
16439021 |
gcttcaaaacttcatcattgttaaaattagaatgaggaaacaatccataactaga |
16438967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 39425452 - 39425545
Alignment:
| Q |
75 |
gatattttgtccgcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcttcgt |
168 |
Q |
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| T |
39425452 |
gatattttatctgcaaaacccatggccccaaacagctctacagctaagttgtgctgagaaacaagttcgaaaagcttcaaaacttcttcttcgt |
39425545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 39604588 - 39604488
Alignment:
| Q |
66 |
aacataccagatattttgtccgcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatctt |
165 |
Q |
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| T |
39604588 |
aacataccagaagctttatcggcaaaacccagagttccaaacagctctacagctatcttgtcctgagcagcaaactcgaaaagctttaaaacttcatctt |
39604489 |
T |
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| Q |
166 |
c |
166 |
Q |
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| T |
39604488 |
c |
39604488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 39503973 - 39504052
Alignment:
| Q |
87 |
gcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcttc |
166 |
Q |
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| T |
39503973 |
gcaaaaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatcttc |
39504052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 44895038 - 44895111
Alignment:
| Q |
87 |
gcaaaaccaagggtccgaaacagctctacagcttccttgtgatgagcaacaacctcaaaaagcttcaaaacttc |
160 |
Q |
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| T |
44895038 |
gcaaaaccgagggtccgaaaaagttccacagctatcttgtgctgagcaacaaatgcaaaaagctccaaaacttc |
44895111 |
T |
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