View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_172 (Length: 215)

Name: NF1459_low_172
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_172
NF1459_low_172
[»] chr1 (2 HSPs)
chr1 (81-200)||(5775725-5775844)
chr1 (1-30)||(7561660-7561689)
[»] chr8 (2 HSPs)
chr8 (1-30)||(41981457-41981486)
chr8 (2-30)||(9013708-9013736)
[»] chr4 (1 HSPs)
chr4 (1-30)||(14335219-14335248)
[»] chr2 (1 HSPs)
chr2 (1-30)||(11184995-11185024)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 5775725 - 5775844
Alignment:
Q  81 atcaattagatatgataactttaaatattacaattcataatttgttgagtcaatacgacaagatataacattaaacttaagatacccataacataaaact 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5775725 atcaattagatatgataactttaaatattacaattcataatttgttgagtcaatacgacaagatataacattaaacttaagatacccataacataaaact 5775824  T
Q  181 attaattaagtgattataat 200  Q
    ||||||||||||||||||||    
T  5775825 attaattaagtgattataat 5775844  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7561660 - 7561689
Alignment:
Q  1 cattggttggtgggtaaattacctaccatt 30  Q
    ||||||||||||||||||||||||||||||    
T  7561660 cattggttggtgggtaaattacctaccatt 7561689  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41981486 - 41981457
Alignment:
Q  1 cattggttggtgggtaaattacctaccatt 30  Q
    ||||||||||||||||||||||||||||||    
T  41981486 cattggttggtgggtaaattacctaccatt 41981457  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 9013736 - 9013708
Alignment:
Q  2 attggttggtgggtaaattacctaccatt 30  Q
    |||||||||||||||||||||||||||||    
T  9013736 attggttggtgggtaaattacctaccatt 9013708  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14335219 - 14335248
Alignment:
Q  1 cattggttggtgggtaaattacctaccatt 30  Q
    ||||||||||||||||||||||||||||||    
T  14335219 cattggttggtgggtaaattacctaccatt 14335248  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11185024 - 11184995
Alignment:
Q  1 cattggttggtgggtaaattacctaccatt 30  Q
    ||||||||||||||||||||||||||||||    
T  11185024 cattggttggtgggtaaattacctaccatt 11184995  T

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