View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_2 (Length: 695)
Name: NF1459_low_2
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 18 - 685
Target Start/End: Original strand, 18057313 - 18057980
Alignment:
| Q |
18 |
ctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtcctctcagctcttcgccgatgagtttcggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18057313 |
ctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtcctctcagctcttcgccgatgagtttcggt |
18057412 |
T |
|
| Q |
118 |
cttatgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18057413 |
cttatgttgtatctaagaagatcaagaacatgttcaactttatacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgt |
18057512 |
T |
|
| Q |
218 |
agaagaatttgaaggcaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaaatcaaacaattttgttaaaacaaacattgg |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18057513 |
agaagaatttgaaggaaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaattcaaacaattttgttaaaacaaacattgg |
18057612 |
T |
|
| Q |
318 |
aagttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatccctc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18057613 |
aagttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatctctc |
18057712 |
T |
|
| Q |
418 |
aagagttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgctcaatttgatttcacccatgtaacatcttctagcattgattt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18057713 |
aagagttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacatcttctagcattgatct |
18057812 |
T |
|
| Q |
518 |
cttctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18057813 |
cttctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccat |
18057912 |
T |
|
| Q |
618 |
ttcttgtaggtgttgtgatccataatggtaaggacctattgagatattgttgggtatgtaggcctttg |
685 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18057913 |
ttcttgtaggtgttgtgatccataatggtaaggacctattgagatattgttgggtatgtaggcttttg |
18057980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 25 - 685
Target Start/End: Original strand, 15733933 - 15734590
Alignment:
| Q |
25 |
gctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtcctctcagctcttcgccgatgagtttcggtcttatgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
15733933 |
gctttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctgacatcctcttggctcttcgccaatgagtttcggtcttatgt |
15734032 |
T |
|
| Q |
125 |
tgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgtagaagaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| || |||||| | ||||||||| |
|
|
| T |
15734033 |
tgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaatcggtagaagaa |
15734132 |
T |
|
| Q |
225 |
tttgaaggcaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaaatcaaacaattttgttaaaacaaacattggaagttgg |
324 |
Q |
| |
|
|||||| | |||| ||| ||||||||||||||| | | |||||||| | |||| ||||| || || | |||||||||||||||||||||||||||| |
|
|
| T |
15734133 |
tttgaaagaaagattgtagaaactcatttgtggatgaagactattgttt---ttatcggttagctcgaaaagttttgttaaaacaaacattggaagttgg |
15734229 |
T |
|
| Q |
325 |
ttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatccctcaagagtt |
424 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
15734230 |
ttttcaagcattatcatctcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaattcgttatccgataaatccctcaagagtt |
15734329 |
T |
|
| Q |
425 |
gaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgctcaatttgatttcacccatgtaacatcttctagcattgatttcttcttt |
524 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
15734330 |
gaatgatgaaagaaccatcaaccaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacagtttcgcgcattgatttcttcttt |
15734429 |
T |
|
| Q |
525 |
ctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccatttcttgt |
624 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||||||||| ||| ||| |||||||| ||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
15734430 |
ctcaagaaacttgcaagcctcttctaatttggatccatttgcaccgtttggatcgaagagacggtgaaaaaacttgtttttcagaacttccatttcttgc |
15734529 |
T |
|
| Q |
625 |
aggtgttgtgatccataatggtaaggacctattgagatattgttgggtatgtaggcctttg |
685 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| |
|
|
| T |
15734530 |
aagtgttgtgatccataatggtaaggacctattgagatgttgctaggtatgtaggcttttg |
15734590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 15727907 - 15728147
Alignment:
| Q |
18 |
ctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtcctctcagctcttcgccgatgagtttcggt |
117 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||| | |||||||| |||||||| || |
|
|
| T |
15727907 |
ctcacatgctttagttttcacaccccctttttttagttctgttattgaatgaatcatctggctctgacatcctcttggttcttcgccaatgagttttggc |
15728006 |
T |
|
| Q |
118 |
cttatgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| || |||||| || |
|
|
| T |
15728007 |
cttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcatgattcggattgaagcaattggt |
15728106 |
T |
|
| Q |
218 |
agaagaatttgaaggcaagagtgttgaaactcatttgtggt |
258 |
Q |
| |
|
|||||||| |||| | |||| ||| |||||||||||||||| |
|
|
| T |
15728107 |
agaagaatatgaaagaaagattgtagaaactcatttgtggt |
15728147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University