View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_21 (Length: 502)
Name: NF1459_low_21
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Original strand, 40002314 - 40002789
Alignment:
| Q |
12 |
atgaatggttgtggtttgttaataccgtaaaacattttaaaccattcatttataaaaattaacctttatgtatactatgactatttgcaaaaaagtagtc |
111 |
Q |
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| T |
40002314 |
atgaatggttgtggtttgttaataccgtaaaacattttaaaccattcatttatgaaaattaacttttatgtatactatgactatttgcaaaaaagtagtc |
40002413 |
T |
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| Q |
112 |
aataacgtatgacttaatttgataattaatagtgaataaactattagattacattttgaagtaacataagaaaaatgtcatatgaactgtaaaaacatgt |
211 |
Q |
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| T |
40002414 |
aataacgtatgacttaatttgataattaataatgaataaactattagattacattt-gaagtaacataagaaaaatgtcatatgaactgtaaaaacatgt |
40002512 |
T |
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| Q |
212 |
tactactactattaatatgagtattgacaattggattgagtctaatagaatgagttagactattaacaatataatgaatcaatactttagtgactggatg |
311 |
Q |
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| T |
40002513 |
tattgctactattaatatgagtattaacaattggattgagtctaatagaatgagttagactattaacaatataatgaatcaatactttagtgactggatg |
40002612 |
T |
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| Q |
312 |
aggtgttcaaatttaatgtttaacattgtttcaaatatgatcaaccctaacaaggaaagatataaaaaaccaaaatgtgagaatgtttattgcaa---ta |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40002613 |
aggtgttcaaatttaatgttta--attgtttcaaatatgatcaaccctaacaaggaaagatataaaaaaccaaaatgtgagaatgtttattgcaatacta |
40002710 |
T |
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| Q |
409 |
annnnnnnatttatgaaaagattttcattcaagactattaaagactttcatttattatatcgaatttttacaggaaaat |
487 |
Q |
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| T |
40002711 |
atttttttatctatgaaaagattttcattcaagactattaaagactttcatttattatatcgaatttttacaggaaaat |
40002789 |
T |
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