View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_22 (Length: 494)
Name: NF1459_low_22
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Original strand, 29400510 - 29400980
Alignment:
| Q |
8 |
tgaaatgaaggtagatcctgtggcatctgatgaaggaacaggcgaagcaattccattggaagggaatggttcaccggtatctccttggtggcagcagctt |
107 |
Q |
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| T |
29400510 |
tgaaacgaaggtagatcctgtggcatctgatgaaggaacaggcgaagcaattccattggaagggaatggttcaccggtatctccttggtggcagcagctt |
29400609 |
T |
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| Q |
108 |
cctaagcgctggcttatcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagtatcttatattggtattcacaatctaaattac |
207 |
Q |
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| T |
29400610 |
cctaagcgctggcttatcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagtatcttatattggtattcacaatctaaattac |
29400709 |
T |
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| Q |
208 |
catgtgtttgtttggattggtggcggatcgtttattatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgcagcttttgcactac |
307 |
Q |
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| T |
29400710 |
catgtgtttgtttggattggtggcggatcgtttattatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgtagcttttgcactac |
29400809 |
T |
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| Q |
308 |
cgtgattttacactgcgattctgtcaaacttaccgctaaaccaaacacagtcatatgtcttaatgtttgccatgtatcaaacttccaatatgtacactac |
407 |
Q |
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| T |
29400810 |
cgtgattttacactgcgattctgtcaaacttaccgctaaaccaaacacagtcatatgtcttaatgtttgccatgtatcaaacttccaatatgtacactac |
29400909 |
T |
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| Q |
408 |
tttatatgtccacttattatgctttctccttgaattatgtgaagcatgtaaaaatgtagttgagtgttttt |
478 |
Q |
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| T |
29400910 |
tttatatgtccacttattatgctttctccttgaattatgtgaagcatgcaaaaatgtagttgagtgttttt |
29400980 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 11320981 - 11320890
Alignment:
| Q |
86 |
atctccttggtggcagcagcttcctaagcgctggcttatcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagta |
177 |
Q |
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| T |
11320981 |
atctccttggtggcagcagtttcctaagcgatgggttattgtactgctatgttttacagcattcctgctttgtaatatggatcgtgtgagta |
11320890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 31633761 - 31633834
Alignment:
| Q |
241 |
attatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgcagcttttgcactaccgtgatt |
314 |
Q |
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| T |
31633761 |
attatcgctttgtgatgcatgtgtgccatgattttgttggaatttcaaagtgtagcttttgccctactgtgatt |
31633834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 16852957 - 16852995
Alignment:
| Q |
262 |
tgcgccatgattttgttaaagcttcaaagtgcagctttt |
300 |
Q |
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| T |
16852957 |
tgcgccatgattttgttaaaacttcaaagtgtagctttt |
16852995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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