View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_24 (Length: 484)
Name: NF1459_low_24
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 243 - 475
Target Start/End: Complemental strand, 28440914 - 28440682
Alignment:
| Q |
243 |
tgatggaaaactgattagtgttgatttgacttttaaaggggaggctcatggatggatcatttgtggcagtgaaagtgctttctgttgagactgaatctat |
342 |
Q |
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| T |
28440914 |
tgatggaaaactgattagtgttgatttgacttttaaaggggaggctcatggatggatcatttgtggcagtgaaagtgctttctgttgagactgaatctat |
28440815 |
T |
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| Q |
343 |
gagaggagagagggaatttgttgcagaattggctgcactagcaaatataaagcaccaaaatcttgttggttttaaagggtgttgtgttgaaggagcaaaa |
442 |
Q |
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| T |
28440814 |
gagaggagagagggaatttgttgcagaattggctgcactatcaaatataaagcaccaaaatcttgttggttttaaagggtgttgtgttgaaggagcaaaa |
28440715 |
T |
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| Q |
443 |
agatatttagtctatgattatatggagaataat |
475 |
Q |
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| T |
28440714 |
agatatttagtctatgattatatggagaataat |
28440682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 28441143 - 28440939
Alignment:
| Q |
17 |
agtagttcttgtttatcatgttttgattttgannnnnnnnnncatatgcagattatgctgagggagatattaatgatggaagttttcgtgtattcactta |
116 |
Q |
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| T |
28441143 |
agtagttcttgtttatcatgttttgattttgattttttttt-catatgcagattatgctgagggagatattaatgatggaagttttcgtgtattcactta |
28441045 |
T |
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| Q |
117 |
taaccaattgaaatctgctactaataattttgatcacaaaattggtcaaggtggatttggctctgtttataaggtgataatatattacattctaatgaaa |
216 |
Q |
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| T |
28441044 |
taaccaattgaaatctgctactaataattttgatcacaaaattggtcaaggtggatttggctctgtttataaggtgataatatattacattctaatgaaa |
28440945 |
T |
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| Q |
217 |
attagc |
222 |
Q |
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| T |
28440944 |
attagc |
28440939 |
T |
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