View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_27 (Length: 476)

Name: NF1459_low_27
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_27
NF1459_low_27
[»] scaffold0005 (2 HSPs)
scaffold0005 (19-352)||(19450-19783)
scaffold0005 (357-460)||(19120-19223)
[»] chr4 (2 HSPs)
chr4 (19-352)||(14819929-14820262)
chr4 (357-460)||(14820489-14820592)
[»] chr2 (5 HSPs)
chr2 (113-313)||(32145929-32146129)
chr2 (95-330)||(977-1212)
chr2 (95-330)||(21332860-21333095)
chr2 (95-232)||(21342748-21342885)
chr2 (361-462)||(32146411-32146513)
[»] chr1 (2 HSPs)
chr1 (24-301)||(12058297-12058571)
chr1 (361-440)||(12058856-12058935)
[»] chr7 (1 HSPs)
chr7 (357-440)||(15559659-15559742)
[»] chr6 (1 HSPs)
chr6 (361-440)||(15593246-15593325)


Alignment Details
Target: scaffold0005 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 19783 - 19450
Alignment:
Q  19 caaagtacgcgcaagaaccgtcagtcggctaagaaagggttatgtatggaataagagaaatacgcataagttccagaaggttcttcctcacaactcaggg 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19783 caaagtacgcgcaagaactgtcagtcggctaagaaagggttatgtatgaaataagagaaatacgcataagttccataaggttcttcctcacaactcaggg 19684  T
Q  119 taatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcgagccttatccggatatgaagttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  19683 taatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaggagaagatgacaatactcgagccttatccgaatatgaagttct 19584  T
Q  219 gaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtatgtttaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19583 gaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtatgtttaag 19484  T
Q  319 atatacatataattagggagaaacatggaaggac 352  Q
    ||||||||||||||||||||||||||||||||||    
T  19483 atatacatataattagggagaaacatggaaggac 19450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 19223 - 19120
Alignment:
Q  357 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcctaaaatgtgttgac 456  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  19223 gccgtaagcgagtaaactcgcttaaagcgtgtatactccagagccaactcgccatgagcgagtttggggcgagttgcacaacttcctaaaatgtgttgac 19124  T
Q  457 tcgt 460  Q
    ||||    
T  19123 tcgt 19120  T

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Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 14819929 - 14820262
Alignment:
Q  19 caaagtacgcgcaagaaccgtcagtcggctaagaaagggttatgtatggaataagagaaatacgcataagttccagaaggttcttcctcacaactcaggg 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14819929 caaagtacgcgcaagaactgtcagtcggctaagaaagggttatgtatgaaataagagaaatacgcataagttccataaggttcttcctcacaactcaggg 14820028  T
Q  119 taatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcgagccttatccggatatgaagttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  14820029 taatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaggagaagatgacaatactcgagccttatccgaatatgaagttct 14820128  T
Q  219 gaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtatgtttaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820129 gaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtatgtttaag 14820228  T
Q  319 atatacatataattagggagaaacatggaaggac 352  Q
    ||||||||||||||||||||||||||||||||||    
T  14820229 atatacatataattagggagaaacatggaaggac 14820262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 357 - 460
Target Start/End: Original strand, 14820489 - 14820592
Alignment:
Q  357 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcctaaaatgtgttgac 456  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14820489 gccgtaagcgagtaaactcgcttaaagcgtgtatactccagagccaactcgccatgagcgagtttggggcgagttgcacaacttcctaaaatgtgttgac 14820588  T
Q  457 tcgt 460  Q
    ||||    
T  14820589 tcgt 14820592  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 32145929 - 32146129
Alignment:
Q  113 tcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcgagccttatccggatatga 212  Q
    ||||||||| | || |||| |||||||||||||| | | | |||||||| |||||||  ||| ||||||||| |||||||   || ||||||||||||||    
T  32145929 tcagggtaacgttcaagtcgtcaagtgtaataaccgatgttcgaataaataggtactgctcaggagaagatggcaatacttaggctttatccggatatga 32146028  T
Q  213 agttctgaagattcaagttcagtact-tttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtat 311  Q
    || ||||||||||||||||||||| | || ||||  ||| | | |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  32146029 agctctgaagattcaagttcagtattcttggaaatgagggaga-agatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtat 32146127  T
Q  312 gt 313  Q
    ||    
T  32146128 gt 32146129  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 330
Target Start/End: Original strand, 977 - 1212
Alignment:
Q  95 aaggttcttcctcacaactcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcg 194  Q
    ||||||||||||  | ||||||||||   ||| ||||||| ||||| ||||| | |||| ||||||||| ||| |  ||| |||||||| || |||||||    
T  977 aaggttcttccttgcgactcagggtagcaatcaagtcatcgagtgttataaccgatatctgaataaagaagtatttctcaggagaagataacgatactcg 1076  T
Q  195 agccttatccggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttat 294  Q
    ||||||||| |||||| ||||| ||| |||||||||||| | || ||||| ||||  || |||||||||||||||| | ||| ||| |  ||||||||||    
T  1077 agccttatctggatataaagttttgaggattcaagttcaatgctcttgaagcaagtgaatgagatgtcgtcatgtgagtcaacgattccacatgatttat 1176  T
Q  295 gttatgcaataatgtatgtttaagatatacatataa 330  Q
    |||||||| |||||| ||| | || |||||||||||    
T  1177 gttatgcagtaatgtctgtctgaggtatacatataa 1212  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 330
Target Start/End: Original strand, 21332860 - 21333095
Alignment:
Q  95 aaggttcttcctcacaactcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcg 194  Q
    ||||||||||||  | ||||| ||||   ||| ||||||| ||||| ||||| |||||| ||||||||| ||| |  ||| ||||| || || |||||||    
T  21332860 aaggttcttccttgcgactcaaggtagcaatcaagtcatcgagtgttataaccggtatctgaataaagaagtatttctcaggagaaaataacgatactcg 21332959  T
Q  195 agccttatccggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttat 294  Q
    ||||||||| |||||| ||||||||| |||||||||||| | || ||||| ||||  || |||||||||||||||| | ||||||| |  ||||||||||    
T  21332960 agccttatctggatataaagttctgaggattcaagttcaatgctcttgaagcaagtgaatgagatgtcgtcatgtgagtcaaggattccacatgatttat 21333059  T
Q  295 gttatgcaataatgtatgtttaagatatacatataa 330  Q
    |||| ||| |||||| ||| | || |||||||||||    
T  21333060 gttacgcagtaatgtctgtctgaggtatacatataa 21333095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 21342748 - 21342885
Alignment:
Q  95 aaggttcttcctcacaactcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcg 194  Q
    ||||||||||||  | ||||| ||||   ||| ||||||| ||||| ||||| |||||||||||||||| ||| |  ||| |||| ||| || |||||||    
T  21342748 aaggttcttccttgcgactcaaggtagcaatcaagtcatcgagtgttataaccggtatccgaataaagatgtatttctcaggagaggataacgatactcg 21342847  T
Q  195 agccttatccggatatgaagttctgaagattcaagttc 232  Q
    |||||| ||  ||||| ||||||||| |||||| ||||    
T  21342848 agccttttctagatataaagttctgaggattcatgttc 21342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 32146411 - 32146513
Alignment:
Q  361 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcct-aaaatgtgttgactcg 459  Q
    |||||||||| ||||  |||| || || | ||| || ||||||||||||||  ||| |||| ||| |||||||||||||| || ||||||||||||||||    
T  32146411 taagcgagtatactcatttaaggcgtgcaaacttcagagccaactcgccataggcgggcttggggtgagttgcacaactttctaaaaatgtgttgactcg 32146510  T
Q  460 tcc 462  Q
    |||    
T  32146511 tcc 32146513  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 12058297 - 12058571
Alignment:
Q  24 tacgcgcaagaaccgtcagtcggctaagaaagggttatgtatgga-ataagagaaatacgcataagttccagaaggttcttcctcacaactcagggtaat 122  Q
    ||||||||||||| ||||||||||||  ||||||| |||||   | | |||||||||||   |||| | ||||||||||||| |  | |||||  |||||    
T  12058297 tacgcgcaagaacggtcagtcggctagaaaagggt-atgtactaagacaagagaaatacatgtaagattcagaaggttcttcttg-cgactcaaagtaat 12058394  T
Q  123 gatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaagagaagatgacaatactcgagccttatccggatatgaagttctgaag 222  Q
    |||||||||||||||||| ||||  ||||| |||| || ||| ||| | ||| |||||  | ||||||||||||| |||| || |||||| |||| ||||    
T  12058395 gatcgagtcatcaagtgtgataatcggtattcgaagaa-gagataccactcaggagaaagtaacaatactcgagcattattcgaatatgatgttc-gaag 12058492  T
Q  223 attcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgc 301  Q
    |||||  ||||  | | ||| | ||||| || ||||||||| |||||||  |||||||||| |||||||||||||||||    
T  12058493 attcagattcatcattcttggagcaagggaacgagatgtcgccatgtggatcaaggatcctacatgatttatgttatgc 12058571  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 12058856 - 12058935
Alignment:
Q  361 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 440  Q
    ||||||||||||||| ||||| || || | |||||| ||||||||||||||  | |||||| ||||||||  ||||||||    
T  12058856 taagcgagtaaactcacttaaggcgtgcaaactccagagccaactcgccattggggagcttggggcgagtcacacaactt 12058935  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 440
Target Start/End: Original strand, 15559659 - 15559742
Alignment:
Q  357 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 440  Q
    ||||||||||||||||||| ||||| || || | |||||| |||||||| |||||  |||||||| |||||||| |||||||||    
T  15559659 gccgtaagcgagtaaactcacttaaggcgtgcaaactccagagccaactagccattggcgagcttggggcgagtcgcacaactt 15559742  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 15593246 - 15593325
Alignment:
Q  361 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 440  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| |||| ||||||| | |||| |||| ||||||||    
T  15593246 taagcaagtaaactcgcttaaagcgtgtaaactccaaagccaactcaccataagcgagcctggggcaagtttcacaactt 15593325  T

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