View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_28 (Length: 472)
Name: NF1459_low_28
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 102 - 455
Target Start/End: Complemental strand, 51901397 - 51901041
Alignment:
| Q |
102 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggtgcaatgtaacacagc---ttgttcaacaaaagaag |
198 |
Q |
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| T |
51901397 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggagcaatgtaacacagcagcttgttcaacaaaagaag |
51901298 |
T |
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| Q |
199 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaannnnnnnngttcttgttcttcattatttgcctcttaaaatcagccc |
298 |
Q |
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| T |
51901297 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaatttttgttgttcttgttcttcattatttgcctcttaaaatcagccc |
51901198 |
T |
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| Q |
299 |
taaccctccaaaacaagctcctcaacttcctcttcccatgcacaaacaccactcgtggctcaaaacagcagcagaacttcattatattcaactaaatttc |
398 |
Q |
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| T |
51901197 |
taaccctccaaaacaagctcctcaactttctcttcccatgcataaacaccactcgtggctcaaaacagcagcagaacttcattatattcaactaaatttc |
51901098 |
T |
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| Q |
399 |
ttgttcacttttcaaaccaaaaagaaaagagagaataaaagatgaagacaaagtgag |
455 |
Q |
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| T |
51901097 |
ttgttcacttttcaaaccaaaaagaaaagagagaataaaagatgaagacaaagtgag |
51901041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 51901490 - 51901436
Alignment:
| Q |
9 |
acatcatcattcatcacaaacatgacaaggaattaagactacatattacataatc |
63 |
Q |
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| T |
51901490 |
acatcatcattcatcacaaacatgacaaggaattaagactacatattacataatc |
51901436 |
T |
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