View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_29 (Length: 468)
Name: NF1459_low_29
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 29085304 - 29084866
Alignment:
| Q |
19 |
aatagatgaaaaagttctccttcaaaatatctaacactgccatattttaagagatctcttaccatcacatctaattggtcttgagttctccatatttact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29085304 |
aatagatgaaaaagttctccttcaaaatatctaacactgccatattttaagagatctcttaccatcacatctaattgatcttgagttctccatatttact |
29085205 |
T |
|
| Q |
119 |
taatcaaacaataataataccactcgcactaaccaccttccaaaaatccaactcaatcaacatgtgtaaagtagcactaactgaaattgtggaagaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29085204 |
ctttcaaacaataataataccactcacactaaccaccttccaaaaatccaactcaatcaacatgtgtaaagtagcactaactgaaatagtggaagaaatt |
29085105 |
T |
|
| Q |
219 |
tttcaaagcagagcaattattaaacctaaaagaggaagaaataattgacacaacagtagcctttggacccaataatcaatagctcttattttctctttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29085104 |
tttcaaagcagagcaattattaaacctaaaagaggaagaaataattgacacaacagtagcctttggacccaataatcaatagctcttattttatctttct |
29085005 |
T |
|
| Q |
319 |
ttatatactgctacttgaagaacaaaaggagggtgtggaaaacaaatgagagatataattgttctagagatagaaaatagt----gaagaagagtgtgca |
414 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29085004 |
ttatatactgctacttgaagaacaaaaagagggtgtggaaaacaaatgagagatataattgttctagagatagaaaatagtgaaggaagaagagtgtgca |
29084905 |
T |
|
| Q |
415 |
ggaagttgatgcaatctcaccaccaatatcaccggtact |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29084904 |
agaagttgatgcaatctcaccaccaatatcactggtact |
29084866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 29090890 - 29090824
Alignment:
| Q |
155 |
cttccaaaaatccaactcaatca-acatgtgtaaagtagcactaactgaaattgtggaagaaattttt |
221 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |||| || |||||||||||||| || ||||| |
|
|
| T |
29090890 |
cttccaaaaatccaactca-tcatacatgtgtaaagcagcagtagctgaaattgtggaacaatttttt |
29090824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University