View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_3 (Length: 681)

Name: NF1459_low_3
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_3
NF1459_low_3
[»] chr6 (21 HSPs)
chr6 (272-673)||(13072612-13073013)
chr6 (272-673)||(13076816-13077217)
chr6 (48-212)||(13072388-13072552)
chr6 (48-212)||(13076592-13076756)
chr6 (464-614)||(13065260-13065410)
chr6 (464-614)||(13072014-13072164)
chr6 (464-614)||(13076218-13076368)
chr6 (518-587)||(13064797-13064866)
chr6 (368-459)||(13065149-13065237)
chr6 (518-587)||(13071551-13071620)
chr6 (368-459)||(13071903-13071991)
chr6 (534-587)||(13072360-13072413)
chr6 (518-587)||(13075755-13075824)
chr6 (368-459)||(13076107-13076195)
chr6 (534-587)||(13076564-13076617)
chr6 (48-108)||(13064841-13064901)
chr6 (48-108)||(13071595-13071655)
chr6 (48-108)||(13075799-13075859)
chr6 (183-212)||(13064982-13065011)
chr6 (183-212)||(13071736-13071765)
chr6 (183-212)||(13075940-13075969)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 272 - 673
Target Start/End: Original strand, 13072612 - 13073013
Alignment:
Q  272 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072612 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 13072711  T
Q  372 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttaccttcttcttgttcctcat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13072712 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttcttgttcctcat 13072811  T
Q  472 ttttgattatgcattgttcaacttcgttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtcttctccttt 571  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072812 ctttgattatgcattgttcaacttctttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtcttctccttt 13072911  T
Q  572 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgatattct 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13072912 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgattttct 13073011  T
Q  672 tg 673  Q
    ||    
T  13073012 tg 13073013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 272 - 673
Target Start/End: Original strand, 13076816 - 13077217
Alignment:
Q  272 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13076816 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 13076915  T
Q  372 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttaccttcttcttgttcctcat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13076916 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttcttgttcctcat 13077015  T
Q  472 ttttgattatgcattgttcaacttcgttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtcttctccttt 571  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077016 ctttgattatgcattgttcaacttctttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtcttctccttt 13077115  T
Q  572 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgatattct 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13077116 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgattttct 13077215  T
Q  672 tg 673  Q
    ||    
T  13077216 tg 13077217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 13072388 - 13072552
Alignment:
Q  48 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaaccactttatcagctactacttctaatgttgtagtctcctg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13072388 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaaccactttatcagccactacttctaatgttgtagtctcctg 13072487  T
Q  148 cattgcatgaagtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072488 cattgcatgaagtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 13072552  T

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Target: chr6; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 13076592 - 13076756
Alignment:
Q  48 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaaccactttatcagctactacttctaatgttgtagtctcctg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13076592 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaaccactttatcagccactacttctaatgttgtagtctcctg 13076691  T
Q  148 cattgcatgaagtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13076692 cattgcatgaagtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 13076756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 614
Target Start/End: Original strand, 13065260 - 13065410
Alignment:
Q  464 ttcctcatttttgattatgcattgttcaacttcgttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtct 563  Q
    |||||| | |||||||||||||| ||||||||| || | ||||||||||| |  |||||||||||||  ||||||||||||||||||||||||||| |||    
T  13065260 ttcctcgtctttgattatgcattcttcaacttcttttcctgttttactttttgttgactcttgaacatccattttggagtcctttttctttgttttctct 13065359  T
Q  564 tctcctttaacttcaaattgttgaaccactttatctgctgctgcttctaat 614  Q
    | | ||| |||||||||||||||| || ||||||||||| | |||||||||    
T  13065360 ttttcttcaacttcaaattgttgagccgctttatctgctacagcttctaat 13065410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 614
Target Start/End: Original strand, 13072014 - 13072164
Alignment:
Q  464 ttcctcatttttgattatgcattgttcaacttcgttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtct 563  Q
    |||||| | |||||||||||||| ||||||||| || | ||||||||||| |  |||||||||||||  ||||||||||||||||||||||||||| |||    
T  13072014 ttcctcgtctttgattatgcattcttcaacttcttttcctgttttactttttgttgactcttgaacatccattttggagtcctttttctttgttttctct 13072113  T
Q  564 tctcctttaacttcaaattgttgaaccactttatctgctgctgcttctaat 614  Q
    | | ||| |||||||||||||||| || ||||||||||| | |||||||||    
T  13072114 ttttcttcaacttcaaattgttgagccgctttatctgctacagcttctaat 13072164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 614
Target Start/End: Original strand, 13076218 - 13076368
Alignment:
Q  464 ttcctcatttttgattatgcattgttcaacttcgttgcgtgttttactttcttctgactcttgaacagacattttggagtcctttttctttgttttgtct 563  Q
    |||||| | |||||||||||||| ||||||||| || | ||||||||||| |  |||||||||||||  ||||||||||||||||||||||||||| |||    
T  13076218 ttcctcgtctttgattatgcattcttcaacttcttttcctgttttactttttgttgactcttgaacatccattttggagtcctttttctttgttttctct 13076317  T
Q  564 tctcctttaacttcaaattgttgaaccactttatctgctgctgcttctaat 614  Q
    | | ||| |||||||||||||||| || ||||||||||| | |||||||||    
T  13076318 ttttcttcaacttcaaattgttgagcctctttatctgctacagcttctaat 13076368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 587
Target Start/End: Original strand, 13064797 - 13064866
Alignment:
Q  518 tgactcttgaacagacattttggagtcctttttctttgttttgtcttctcctttaacttcaaattgttga 587  Q
    |||||||||||||   |||||||| ||| ||||||||||||| ||||||| || ||||||||||||||||    
T  13064797 tgactcttgaacatctattttggattcccttttctttgttttttcttctctttcaacttcaaattgttga 13064866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 13065149 - 13065237
Alignment:
Q  368 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttaccttctt 459  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||||||  |||||||||||    
T  13065149 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13065237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 587
Target Start/End: Original strand, 13071551 - 13071620
Alignment:
Q  518 tgactcttgaacagacattttggagtcctttttctttgttttgtcttctcctttaacttcaaattgttga 587  Q
    |||||||||||||   |||||||| ||| ||||||||||||| ||||||| || ||||||||||||||||    
T  13071551 tgactcttgaacatctattttggattcccttttctttgttttttcttctctttcaacttcaaattgttga 13071620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 13071903 - 13071991
Alignment:
Q  368 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttaccttctt 459  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||||||  |||||||||||    
T  13071903 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13071991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 13072360 - 13072413
Alignment:
Q  534 attttggagtcctttttctttgttttgtcttctcctttaacttcaaattgttga 587  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||| |||||||    
T  13072360 attttggattcctttttctttgttttttcttctccttcaacttcaagttgttga 13072413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 587
Target Start/End: Original strand, 13075755 - 13075824
Alignment:
Q  518 tgactcttgaacagacattttggagtcctttttctttgttttgtcttctcctttaacttcaaattgttga 587  Q
    |||||||||||||   |||||||| ||| ||||||||||||| ||||||| || ||||||||||||||||    
T  13075755 tgactcttgaacatctattttggattcccttttctttgttttttcttctctttcaacttcaaattgttga 13075824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 13076107 - 13076195
Alignment:
Q  368 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttaccttctt 459  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||||||  |||||||||||    
T  13076107 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13076195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 13076564 - 13076617
Alignment:
Q  534 attttggagtcctttttctttgttttgtcttctcctttaacttcaaattgttga 587  Q
    |||||||| ||| ||||||||||||| |||||||||| |||||||| |||||||    
T  13076564 attttggattccattttctttgttttttcttctccttcaacttcaagttgttga 13076617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13064841 - 13064901
Alignment:
Q  48 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaac 108  Q
    |||||| ||||||||||| ||||||||| |||| |||||||| || ||| |||||||||||    
T  13064841 cttctctttcaacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaac 13064901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13071595 - 13071655
Alignment:
Q  48 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaac 108  Q
    |||||| ||||||||||| ||||||||| |||| |||||||| || ||| |||||||||||    
T  13071595 cttctctttcaacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaac 13071655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13075799 - 13075859
Alignment:
Q  48 cttctccttcaacttcaagttgttgagtgcttgatgagcttggaaactttgattcttgaac 108  Q
    |||||| ||||||||||| ||||||||| |||| |||||||| || ||| |||||||||||    
T  13075799 cttctctttcaacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaac 13075859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 13064982 - 13065011
Alignment:
Q  183 agttttgtttggtaccggtaccctgtagtc 212  Q
    ||||||||||||||||||||||||||||||    
T  13064982 agttttgtttggtaccggtaccctgtagtc 13065011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 13071736 - 13071765
Alignment:
Q  183 agttttgtttggtaccggtaccctgtagtc 212  Q
    ||||||||||||||||||||||||||||||    
T  13071736 agttttgtttggtaccggtaccctgtagtc 13071765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 13075940 - 13075969
Alignment:
Q  183 agttttgtttggtaccggtaccctgtagtc 212  Q
    ||||||||||||||||||||||||||||||    
T  13075940 agttttgtttggtaccggtaccctgtagtc 13075969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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