View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_30 (Length: 462)

Name: NF1459_low_30
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_30
NF1459_low_30
[»] scaffold0103 (3 HSPs)
scaffold0103 (91-149)||(5626-5684)
scaffold0103 (401-441)||(5334-5374)
scaffold0103 (305-343)||(5432-5470)
[»] chr7 (3 HSPs)
chr7 (91-149)||(12808201-12808259)
chr7 (401-441)||(12807909-12807949)
chr7 (305-343)||(12808007-12808045)
[»] chr6 (4 HSPs)
chr6 (91-149)||(2634325-2634383)
chr6 (99-149)||(12084006-12084056)
chr6 (401-441)||(2634635-2634675)
chr6 (305-343)||(2634539-2634577)
[»] chr8 (1 HSPs)
chr8 (99-149)||(27261513-27261563)
[»] chr4 (1 HSPs)
chr4 (107-148)||(27897025-27897066)
[»] chr5 (2 HSPs)
chr5 (94-149)||(21837883-21837939)
chr5 (99-149)||(4807291-4807342)


Alignment Details
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 5684 - 5626
Alignment:
Q  91 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5684 tcacaaagctttctacttgcataagaacaaactgcaggaaagagaagaaaactatactg 5626  T

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Target: scaffold0103; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 5374 - 5334
Alignment:
Q  401 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 441  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5374 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 5334  T

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Target: scaffold0103; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 5470 - 5432
Alignment:
Q  305 ctttatgcttgatggcaaagaaacctgaagaagaagatg 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5470 ctttatgcttgatggcaaagaaacctgaagaagaagatg 5432  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 12808259 - 12808201
Alignment:
Q  91 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12808259 tcacaaagctttctacttgcataagaacaaacagcaggaaagagaagaaaactatactg 12808201  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 12807949 - 12807909
Alignment:
Q  401 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 441  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12807949 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 12807909  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 12808045 - 12808007
Alignment:
Q  305 ctttatgcttgatggcaaagaaacctgaagaagaagatg 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12808045 ctttatgcttgatggcaaagaaacctgaagaagaagatg 12808007  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 2634325 - 2634383
Alignment:
Q  91 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2634325 tcacaaagctttctacttgcataagaacaaactgcaggaaagagaagaaaactatactg 2634383  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 12084006 - 12084056
Alignment:
Q  99 ctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12084006 ctttctacttgcataagaacaaaccgcaggaaagaaaagaaaactatactg 12084056  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 2634635 - 2634675
Alignment:
Q  401 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 441  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2634635 ctaagaacaatgaaccggacacagaaaggtatggtgagagg 2634675  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 2634539 - 2634577
Alignment:
Q  305 ctttatgcttgatggcaaagaaacctgaagaagaagatg 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2634539 ctttatgcttgatggcaaagaaacctgaagaagaagatg 2634577  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 27261513 - 27261563
Alignment:
Q  99 ctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27261513 ctttctacttgcataagaacaaaccgcaggaaagaaaagaaaactatactg 27261563  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 27897025 - 27897066
Alignment:
Q  107 ttgcataagaacaaaccgcaggaaagagaagaaaactatact 148  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  27897025 ttgcataaaaacaaaccgcaggaaagaaaagaaaactatact 27897066  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 21837939 - 21837883
Alignment:
Q  94 caaagctttctacttgcataa-gaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    |||| |||||||| ||||||| ||||||||||||| ||||| |||||||||||||||    
T  21837939 caaaactttctacctgcataaagaacaaaccgcagcaaagaaaagaaaactatactg 21837883  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 4807291 - 4807342
Alignment:
Q  99 ctttctacttgcataa-gaacaaaccgcaggaaagagaagaaaactatactg 149  Q
    |||||||| ||||||| ||||||||||||| ||||| |||||||||||||||    
T  4807291 ctttctacctgcataaagaacaaaccgcagcaaagaaaagaaaactatactg 4807342  T

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