View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_33 (Length: 454)
Name: NF1459_low_33
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 33372597 - 33372908
Alignment:
| Q |
18 |
gttaattcattgtataatcagttttttgggattccttttatttagtcgtattagtgacacaacctgtggtatcatgggataatgttaatttataaatact |
117 |
Q |
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| T |
33372597 |
gttaattcattgtataatcagttttttgggattccttttatttagtcgtattagtgacacaacctgtggtatcatgggataatgttaatttataaatact |
33372696 |
T |
|
| Q |
118 |
ttcttagaatgtacgtcgatgaatcacaagatagtatcaaaatttgggttaatagttacattcttcgtcactgattataagacattttacaataaatatt |
217 |
Q |
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| T |
33372697 |
ttcttcgaatgtacgtcgatgaatcacaagatagtatcaaaatttgggttaatagttgcattcttcgtcactaattataagacattttacaataaatatt |
33372796 |
T |
|
| Q |
218 |
ttatccttgaatataagactgtttataaatttttaaatgcatttattatcctttttataatttgtcttaaaatgtgtaacannnnnnngaacaatagaat |
317 |
Q |
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| T |
33372797 |
ttatccttgaatataagactctttataaatttttaaatgcatttattatcctttttctaatttgtcttaaaatg-gtaacatttttttgaacaatagaat |
33372895 |
T |
|
| Q |
318 |
gtgtaacattgaa |
330 |
Q |
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| T |
33372896 |
gtgtaacattgaa |
33372908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 341 - 447
Target Start/End: Complemental strand, 25250993 - 25250887
Alignment:
| Q |
341 |
cgtgcaagaacgcggggatatagcaagtaagcagcaagttatcccttcacggaccgactacaacaagctcgcgactctaatagaaacagacggtaagctc |
440 |
Q |
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| T |
25250993 |
cgtgcaagaacacaggggcatatcaagtaagcggcaagttatcccttcacggaccgactacaacaagctcgagactctaatagaaacagacggtaagctc |
25250894 |
T |
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| Q |
441 |
tctgctc |
447 |
Q |
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| T |
25250893 |
tctgctc |
25250887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 19093787 - 19093711
Alignment:
| Q |
371 |
gcagcaagttatcccttcacggaccgactacaacaagctcgcgactctaatagaaacagacggtaagctctctgctc |
447 |
Q |
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| T |
19093787 |
gcagcaagttatcccttcatggtccgactacaacaagctcgcgactctaatagaaaccgacggtaagctctctgctc |
19093711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 10456748 - 10456786
Alignment:
| Q |
227 |
aatataagactgtttataaatttttaaatgcatttatta |
265 |
Q |
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| T |
10456748 |
aatataagactatttataaatttttagatgcatttatta |
10456786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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