View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_34 (Length: 445)

Name: NF1459_low_34
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_34
NF1459_low_34
[»] chr2 (2 HSPs)
chr2 (9-373)||(2461500-2461867)
chr2 (394-429)||(2461442-2461477)
[»] chr3 (2 HSPs)
chr3 (249-358)||(3519300-3519409)
chr3 (249-355)||(6056609-6056715)
[»] chr7 (5 HSPs)
chr7 (206-294)||(31446970-31447058)
chr7 (249-306)||(18442053-18442110)
chr7 (250-307)||(48841466-48841523)
chr7 (321-358)||(26554425-26554462)
chr7 (249-306)||(31078475-31078532)
[»] chr8 (1 HSPs)
chr8 (249-359)||(41643131-41643241)
[»] chr1 (2 HSPs)
chr1 (234-356)||(13017779-13017901)
chr1 (217-307)||(27222768-27222858)
[»] chr5 (2 HSPs)
chr5 (225-306)||(5069146-5069227)
chr5 (249-358)||(36855229-36855338)
[»] chr4 (1 HSPs)
chr4 (321-358)||(29236566-29236603)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 2461867 - 2461500
Alignment:
Q  9 gaagaaaattaaatggtgtaaggagaaattcttatcatcagtggct----cactacattctgacttatgttatgtggtgttttttcgactcaaaactcgg 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2461867 gaagaaaattaaatgatgtaaggagaaattcttatcatcagtggctggctcactacattctgacttatgttatgtggtgttttttcgactcaaaactcgg 2461768  T
Q  105 ttcaagcaggaccgctccaacaattcagaggtctagttatagtcttgataattctttatttaaaaagaagcgnnnnnnnnntctaacaccacttcagaaa 204  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||    
T  2461767 ttcaagcaggaccgccccaacaattcaaaggtctagttatagtcttgataattctttatttaaaaagaagtgaaaaaaaa-tctaacaccacttcagaaa 2461669  T
Q  205 gctaagtcgtggttaaataaatgaataatgattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaa 304  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2461668 gctaagtcgtggttaaataaatgaacaatgattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatttacatcaaaa 2461569  T
Q  305 ttactgccttctacatttttacctacggataaatgacatttagtgacggatttttaccgttagtataag 373  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2461568 ttactaccttctacatttttacctacggataaatgacatttagtgacggatttttactgttagtataag 2461500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 429
Target Start/End: Complemental strand, 2461477 - 2461442
Alignment:
Q  394 gcaaattttgaggcccctcaaacttagaggccatgt 429  Q
    ||||||||||||||||||||||||||||||||||||    
T  2461477 gcaaattttgaggcccctcaaacttagaggccatgt 2461442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 358
Target Start/End: Complemental strand, 3519409 - 3519300
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaattactgccttctacatttttacctacggataaatgacatttagt 348  Q
    |||||||||||| |||||||||||||  |||||||||| ||||||| | | ||||||| ||| | || | | |||||||||| || ||||||||||||||    
T  3519409 tttacctacatataaatagacatttacttatggacaattcataattgatagcaaaattgctgtcatccaaacttttacctaccgaaaaatgacatttagt 3519310  T
Q  349 gacggatttt 358  Q
    ||||||||||    
T  3519309 gacggatttt 3519300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 355
Target Start/End: Complemental strand, 6056715 - 6056609
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaattactgccttctacatttttacctacggataaatgacatttagt 348  Q
    |||||||||| | |||||||||||||  |||||||||| ||||||| |||  ||||||  || |||| | | ||||||||||| | ||||||||||||||    
T  6056715 tttacctacaaataaatagacatttacttatggacaattcataattaacaataaaattgttgtcttccaaacttttacctacgaaaaaatgacatttagt 6056616  T
Q  349 gacggat 355  Q
    |||||||    
T  6056615 gacggat 6056609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 31446970 - 31447058
Alignment:
Q  206 ctaagtcgtggttaaataaatgaataatgattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatt 294  Q
    |||||| || |||||||| ||||||||||||||||  | ||| ||||| |||| ||||||||||||||||  |||||||||||||||||    
T  31446970 ctaagttgtagttaaatatatgaataatgattcaaatatgacttttacttacacacaaatagacatttattcatggacaatgcataatt 31447058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 18442110 - 18442053
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaatt 306  Q
    |||||||||||| |||||||||||||| |||  ||||||||||||||||| |||||||    
T  18442110 tttacctacatataaatagacatttatctataaacaatgcataatttacaacaaaatt 18442053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 48841523 - 48841466
Alignment:
Q  250 ttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaatta 307  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||| |||| |||||||    
T  48841523 ttacctacaaacaaatagacatttatttatgaacaatgcataattgacactaaaatta 48841466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 26554425 - 26554462
Alignment:
Q  321 ttttacctacggataaatgacatttagtgacggatttt 358  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  26554425 ttttacctacagataaatgacatttagtgacgtatttt 26554462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 31078475 - 31078532
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaatt 306  Q
    |||||||||| ||||||||||||||   |||| ||||||||||||| ||| |||||||    
T  31078475 tttacctacaaacaaatagacattttcctatgaacaatgcataattgacaacaaaatt 31078532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 359
Target Start/End: Complemental strand, 41643241 - 41643131
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaattactgccttctacatttttacctacggataaatgacatttagt 348  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||| | | ||||||   || |||  | | ||||||||||| | ||||  ||||||||    
T  41643241 tttacctacatacaaagagacatttacatatgggcaatgcataattgatagcaaaatagttgtctttaaaacttttacctacgaaaaaattgcatttagt 41643142  T
Q  349 gacggattttt 359  Q
    || ||||||||    
T  41643141 gatggattttt 41643131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 13017779 - 13017901
Alignment:
Q  234 gattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaattactgccttctacatttttacctacgga 333  Q
    ||||||| ||| || |||| |||||  ||||||||||||||| |||||||| ||| ||||| ||| |||||||  || | | || | ||||||||||  |    
T  13017779 gattcaaacactacttttatctacagtcaaatagacatttatctatggacagtgcctaattgacatcaaaattgttgtcatttagacttttacctacaaa 13017878  T
Q  334 taaatgacatttagtgacggatt 356  Q
    |||||||||||  ||||||||||    
T  13017879 taaatgacattgtgtgacggatt 13017901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 27222768 - 27222858
Alignment:
Q  217 ttaaataaatgaataatgattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaatta 307  Q
    ||||||| |||| ||||| ||||| || ||| ||||| || | | |||||||||||||| ||||||||||| |||||  ||| ||||||||    
T  27222768 ttaaatatatgagtaatggttcaaacatgacatttacttataaataaatagacatttatttatggacaatgaataatggacaacaaaatta 27222858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 5069227 - 5069146
Alignment:
Q  225 atgaataatgattcaatcacgacctttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaatt 306  Q
    ||||| |||||||||| || ||| ||||| |||| ||||||| ||||||||  ||| ||||||||||||| ||| |||||||    
T  5069227 atgaacaatgattcaaacatgacttttacatacaaacaaataaacatttatccatgaacaatgcataattgacaacaaaatt 5069146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 358
Target Start/End: Complemental strand, 36855338 - 36855229
Alignment:
Q  249 tttacctacatacaaatagacatttatatatggacaatgcataatttacaccaaaattactgccttctacatttttacctacggataaatgacatttagt 348  Q
    |||||| ||| | ||||| |||||||  |||| | ||||||||||| ||| ||||||| ||| |||  | | ||||||||||||| ||| ||||||||||    
T  36855338 tttacccacagataaataaacatttacctatgaataatgcataattgacagcaaaattgctgtctttcagacttttacctacggaaaaaggacatttagt 36855239  T
Q  349 gacggatttt 358  Q
    ||| ||||||    
T  36855238 gacagatttt 36855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 29236603 - 29236566
Alignment:
Q  321 ttttacctacggataaatgacatttagtgacggatttt 358  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  29236603 ttttacctacggaaaaatgacatttagtgacggatttt 29236566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University