View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_35 (Length: 440)
Name: NF1459_low_35
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 2046709 - 2047108
Alignment:
| Q |
11 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2046709 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagatttaggtttgcatcca |
2046808 |
T |
|
| Q |
111 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046809 |
aatcatctaaaagatatggattgtactcaagggttatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagt |
2046908 |
T |
|
| Q |
211 |
attctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046909 |
attctg--------------acagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
2046994 |
T |
|
| Q |
311 |
atctctcatagttaatgttggtgatcttttgcaggtaagttttgtgtgtatattttcagaaattgttagtaattatgtaccatactgaaaagagaaaaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046995 |
atctctcatagttaatgttggtgatcttctgcaggtaagttttgtgtgtatattttcagaaattgttagtaattatgtaccatactgaaaagagaaaaac |
2047094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 2029335 - 2029675
Alignment:
| Q |
13 |
attcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaa |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
2029335 |
attcttgcagagatatactactagaatatgggaaacaggtgatgaatctaggaactttgctgtttgaattgttgtcacaagctttaggtttgaatccaaa |
2029434 |
T |
|
| Q |
113 |
tcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcat |
212 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2029435 |
ccatctaaaagatatgggttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaacaaagcat |
2029534 |
T |
|
| Q |
213 |
tctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggat |
312 |
Q |
| |
|
| ||||| || ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2029535 |
tgtgacaatgatttcctcacagtgcttctccaagaccatattggtggcctccaagttctttatgaagataaatggattgatataacacctgtacctggag |
2029634 |
T |
|
| Q |
313 |
ctctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2029635 |
ctctcgtagttaatgttggtgatcttttgcaggcaagtttt |
2029675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 2037462 - 2037804
Alignment:
| Q |
17 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
116 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||| |||||||||||| || ||||||| ||| |
|
|
| T |
2037462 |
ttgcagagatatacttctagaatatggaaaacacatgacaaatctagggaccttactgttttaattgttatcagaagctttaggtctgaatccaaaccat |
2037561 |
T |
|
| Q |
117 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctg |
216 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
2037562 |
ctaaaagatatggattgtgctaaaggactatttgctctttgccattattatccttcttgtccggaaccagaattgactgtgggaacagccaagcattcag |
2037661 |
T |
|
| Q |
217 |
acagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctct |
316 |
Q |
| |
|
|| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
2037662 |
accatggttttctcacagtgcttatccaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctct |
2037761 |
T |
|
| Q |
317 |
catagttaatgttggtgatcttttgcaggtaagttttgtgtgt |
359 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||| ||||| |
|
|
| T |
2037762 |
catagttaatattggtgatcttctgcaggcaagttttctgtgt |
2037804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 2050624 - 2050966
Alignment:
| Q |
11 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
110 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||||| ||||||||||||| |||||| | ||||||||| | || ||||||||||| || ||||| |
|
|
| T |
2050624 |
ttattcttacagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactatttgaattgatgtcagaagctttaggactgaatcca |
2050723 |
T |
|
| Q |
111 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagc |
210 |
Q |
| |
|
|| |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
2050724 |
aaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
2050823 |
T |
|
| Q |
211 |
attctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
||||||| | || ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
2050824 |
attctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgaagataaatggattgatataacacctgtatctgg |
2050923 |
T |
|
| Q |
311 |
atctctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2050924 |
agctctcatagttaatgttggtgatcttttgcaggcaagtttt |
2050966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 2057860 - 2058199
Alignment:
| Q |
14 |
ttcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaat |
113 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
2057860 |
ttcttgcagagatgtgatactataatatgggaaacaagtgatgaatctaggaactttactgtttgaattgttgtcagaagctttaggtttgaatccaaac |
2057959 |
T |
|
| Q |
114 |
catctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcatt |
213 |
Q |
| |
|
|||||||||||||||| |||| || |||||||| |||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2057960 |
catctaaaagatatgggttgtgctgaagggctaattgctctttgtcattattatccttcttatcccgaaccagaattgactgtgggaacaaccaagcatt |
2058059 |
T |
|
| Q |
214 |
ctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatc |
313 |
Q |
| |
|
|||| | || ||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
2058060 |
ctgataatgatttcctgacaatgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgtacctggagc |
2058159 |
T |
|
| Q |
314 |
tctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
2058160 |
tctcctagttaatgttggtgatcttcttcaggcaagtttt |
2058199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 1948822 - 1948480
Alignment:
| Q |
11 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
110 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||| | ||||||||||| || || ||||| ||||||||| | ||| |
|
|
| T |
1948822 |
ttattcttacagagatataaccctagaatatgggaaacacgtgatgaatctagggactatgttgtttgaatttttgtcagaagcattaggtttgaaacca |
1948723 |
T |
|
| Q |
111 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagc |
210 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
1948722 |
aaccatctaaaagatatgggttgtactgaagggctgattgctgtttgccattattatccttcttgtcctgaaccagaactgactatgggaacaactaagc |
1948623 |
T |
|
| Q |
211 |
attctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |
|
|
| T |
1948622 |
attcagaccatagttttctcacagtgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgcaactgg |
1948523 |
T |
|
| Q |
311 |
atctctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
1948522 |
agctctcatagttaatattggtgatcttttgcaggcaagtttt |
1948480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 2055039 - 2055375
Alignment:
| Q |
17 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
116 |
Q |
| |
|
||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||| ||| |
|
|
| T |
2055039 |
ttgcagagatatactgctacgatatgggaaacacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
2055138 |
T |
|
| Q |
117 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctg |
216 |
Q |
| |
|
| ||||||||||||||| || ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2055139 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
2055238 |
T |
|
| Q |
217 |
acagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctct |
316 |
Q |
| |
|
| | || ||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
2055239 |
ataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgacgataaatggattgatataacacctgtatctggagctct |
2055338 |
T |
|
| Q |
317 |
catagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2055339 |
aatagttaatgttggtgatcttttgcaggcaagtttt |
2055375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 2033892 - 2034234
Alignment:
| Q |
11 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
110 |
Q |
| |
|
||||||||||||||||||| | || ||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
2033892 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
2033991 |
T |
|
| Q |
111 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagc |
210 |
Q |
| |
|
|| ||| | ||||||||||||||| || ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
2033992 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtaggaacaacaaagc |
2034091 |
T |
|
| Q |
211 |
attctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
||||||| | || ||| |||||||||||||||||||||||| | |||||||| |||||||| ||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
2034092 |
attctgataatgatttcctcacagtgcttctacaagaccatgttggtggtcttcaagttctgtatgacgacaaatggattgatataacacctgtacctgg |
2034191 |
T |
|
| Q |
311 |
atctctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
| ||||||| ||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
2034192 |
agctctcattgttgatgtcggtgatcttctgcaggcaagtttt |
2034234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 10768363 - 10768699
Alignment:
| Q |
17 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
116 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||| | | || |||||||||||| || ||||||| ||| |
|
|
| T |
10768363 |
ttgcagagatatattgctagaatatggaaaacacatgagaaacctagggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccat |
10768462 |
T |
|
| Q |
117 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctg |
216 |
Q |
| |
|
||||||||||| |||||| || |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10768463 |
ctaaaagatattgattgtgctgaaggattacttgctctcggtcattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctg |
10768562 |
T |
|
| Q |
217 |
acagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctct |
316 |
Q |
| |
|
| | || ||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
10768563 |
ataatgatttcctcactgtgcttctccaagaccatattggtggcctccaagttctttatcaggataaatggattgatattacacctgttcctggggctct |
10768662 |
T |
|
| Q |
317 |
catagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
10768663 |
catagttaatgttggagatcttttgcaggcaagtttt |
10768699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 310
Target Start/End: Original strand, 2022900 - 2023056
Alignment:
| Q |
154 |
tttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgacagtggttttctcacagtgcttctacaagaccatat |
253 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||||||||||||| |||||| |||||||||| | || | | ||| |||| |||||||||||||| ||||| |
|
|
| T |
2022900 |
tttgccattactatccttcctgtccagaaccagaattgactttgggaataaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat |
2022999 |
T |
|
| Q |
254 |
aggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
|| || |||||||||||| |||| ||| ||| ||||| || ||||||| ||||| |
|
|
| T |
2023000 |
tggcggcctccaagttcttcgtgaaaatagttgggttgatgtatcacctgttcctgg |
2023056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 1094256 - 1094306
Alignment:
| Q |
237 |
cttctacaagaccatataggtggtctccaagttctttatgaagataaatgg |
287 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
1094256 |
cttctacaagaccaacttggtggtctacaagttcttcatgaagataaatgg |
1094306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 48907118 - 48906771
Alignment:
| Q |
11 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
110 |
Q |
| |
|
||||||||||||||| ||| | |||||||| | ||||| |||||||| || || |||| | ||||||||| | || |||||||||||| || ||||| |
|
|
| T |
48907118 |
ttattcttgcagagacatactgatagaatatagtaaacaaatgatgaacctgggatttttactatttgaattgctgtcagaagctttaggtctgaatcca |
48907019 |
T |
|
| Q |
111 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagc |
210 |
Q |
| |
|
|| |||||||||||||||| |||| | |||||||| ||||| |||||||||||||||||| || ||||||||||| |||||||||||| || |||| |
|
|
| T |
48907018 |
aaccatctaaaagatatgggttgtgttgaagggctaattgctgcttgccattattatcctccatgccctgaaccagatttgactgtgggactaaaaaagc |
48906919 |
T |
|
| Q |
211 |
attctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctgg |
310 |
Q |
| |
|
||||||||| |||||| || | ||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| | |||| ||| ||| |
|
|
| T |
48906918 |
attctgacactggtttccttgcggtggttctccaagaccatattggtggcctccaagttctttatcaagataaatgggttgatgtgaaacctatacatgg |
48906819 |
T |
|
| Q |
311 |
atctctcatagttaatgttggtgatcttttgcaggtaagttttgtgtg |
358 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
48906818 |
gtctctcgtagttaatgttggtgaccttttgcaggcaagttttttgtg |
48906771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 351
Target Start/End: Complemental strand, 28735465 - 28735273
Alignment:
| Q |
159 |
cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtg |
258 |
Q |
| |
|
||||| |||||| |||||||||||||||| || || ||||||| ||||| |||||||| || ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28735465 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtg |
28735366 |
T |
|
| Q |
259 |
gtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatcttttgcaggtaagtt |
351 |
Q |
| |
|
|||| ||||||||||| |||| || ||||| ||| || |||| ||||| | |||| | |||||| ||||||||||| |||||| ||||| |
|
|
| T |
28735365 |
gtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagtt |
28735273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 28742553 - 28742434
Alignment:
| Q |
153 |
ctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgacagtggttttctcacagtgcttctacaagaccata |
252 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | || || ||||||| |||| |||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
28742553 |
ctttgccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaagaccata |
28742454 |
T |
|
| Q |
253 |
taggtggtctccaagttctt |
272 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
28742453 |
ttggtggccttcaagttctt |
28742434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 28783534 - 28783446
Alignment:
| Q |
159 |
cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgacagtggttttctcacagtgcttctacaaga |
247 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||| ||||||| || || |||||||| ||| ||||||||||| ||||||| ||||| |
|
|
| T |
28783534 |
cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaaga |
28783446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 28700464 - 28700374
Alignment:
| Q |
159 |
cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgacagtggttttctcacagtgcttctacaagacc |
249 |
Q |
| |
|
||||| |||||| |||||||||||||||| || || ||||||| ||||| |||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
28700464 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatgttagttttctcacagtgcttctccaagacc |
28700374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 17183384 - 17183303
Alignment:
| Q |
272 |
ttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt |
353 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
17183384 |
ttatgaaaataaatggattaatataacacctgtaactggagctctcatagttaatgttggcgatcttttgcaggcaagtttt |
17183303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 16439240 - 16439304
Alignment:
| Q |
229 |
tcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgat |
293 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
16439240 |
tcacggtgcttctacaagatcatacaggtggtctccaagttcttcataaagatatgtggattgat |
16439304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 16426017 - 16425974
Alignment:
| Q |
229 |
tcacagtgcttctacaagaccatataggtggtctccaagttctt |
272 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
16426017 |
tcacagtgcttctacaagatcatataggtggcctccaagttctt |
16425974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 16442295 - 16442252
Alignment:
| Q |
229 |
tcacagtgcttctacaagaccatataggtggtctccaagttctt |
272 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
16442295 |
tcacagtgcttctacaagatcatataggtggcctccaagttctt |
16442252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 33771347 - 33771236
Alignment:
| Q |
237 |
cttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatc |
336 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||||||| || || || ||||||||||| | | || || | ||||||||| ||||| ||| ||||||||| |
|
|
| T |
33771347 |
cttctacaagaccgtattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccggtgcatggatctcttatagtaaatattggtgatc |
33771248 |
T |
|
| Q |
337 |
ttttgcaggtaa |
348 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
33771247 |
ttctgcaggtaa |
33771236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 29463893 - 29463943
Alignment:
| Q |
237 |
cttctacaagaccatataggtggtctccaagttctttatgaagataaatgg |
287 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
29463893 |
cttctacaagaccaacttggtggtcttcaagttcttcatgaagataaatgg |
29463943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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