View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_36 (Length: 439)

Name: NF1459_low_36
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_36
NF1459_low_36
[»] chr3 (14 HSPs)
chr3 (189-371)||(50613864-50614046)
chr3 (1-170)||(50613671-50613840)
chr3 (372-439)||(31425535-31425605)
chr3 (372-439)||(37143122-37143194)
chr3 (372-439)||(31931017-31931089)
chr3 (375-439)||(49875800-49875867)
chr3 (372-439)||(15927593-15927665)
chr3 (375-439)||(50886402-50886466)
chr3 (372-439)||(31664625-31664696)
chr3 (372-436)||(50886194-50886262)
chr3 (361-422)||(31350625-31350687)
chr3 (375-439)||(23553589-23553656)
chr3 (403-439)||(34608124-34608160)
chr3 (375-422)||(48353000-48353048)
[»] chr6 (3 HSPs)
chr6 (373-439)||(28982639-28982708)
chr6 (372-435)||(354277-354343)
chr6 (374-422)||(5456869-5456918)
[»] chr8 (8 HSPs)
chr8 (372-439)||(21514937-21515007)
chr8 (368-417)||(10839506-10839556)
chr8 (375-422)||(5771991-5772039)
chr8 (375-422)||(12172136-12172184)
chr8 (375-422)||(12416564-12416612)
chr8 (375-422)||(23754726-23754774)
chr8 (375-439)||(31266232-31266301)
chr8 (375-422)||(33100488-33100536)
[»] chr1 (9 HSPs)
chr1 (366-436)||(46859413-46859486)
chr1 (372-436)||(18982520-18982589)
chr1 (377-422)||(36775112-36775158)
chr1 (372-412)||(36775073-36775114)
chr1 (375-422)||(649772-649820)
chr1 (375-422)||(9566980-9567028)
chr1 (375-422)||(19947760-19947808)
chr1 (375-422)||(42824458-42824506)
chr1 (375-422)||(48983687-48983735)
[»] chr2 (3 HSPs)
chr2 (375-439)||(37468260-37468325)
chr2 (375-439)||(7438572-7438639)
chr2 (375-422)||(43057068-43057116)
[»] chr5 (7 HSPs)
chr5 (375-439)||(1981894-1981962)
chr5 (375-421)||(16594396-16594443)
chr5 (375-439)||(10008511-10008578)
chr5 (379-439)||(25603668-25603731)
chr5 (375-422)||(1293105-1293153)
chr5 (375-422)||(13089801-13089849)
chr5 (375-435)||(42225770-42225833)
[»] chr4 (4 HSPs)
chr4 (375-439)||(54128056-54128124)
chr4 (375-439)||(51734631-51734700)
chr4 (367-422)||(2268527-2268582)
chr4 (375-422)||(51255750-51255798)
[»] chr7 (6 HSPs)
chr7 (374-439)||(2819256-2819326)
chr7 (372-422)||(48814827-48814878)
chr7 (375-439)||(9792770-9792839)
chr7 (375-422)||(12007205-12007253)
chr7 (403-439)||(44255886-44255922)
chr7 (375-435)||(47448830-47448895)
[»] scaffold0432 (1 HSPs)
scaffold0432 (375-435)||(6522-6587)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 189 - 371
Target Start/End: Original strand, 50613864 - 50614046
Alignment:
Q  189 acttacaatgtctataactaccaagtatttgaaggtagttgtgtctctttgttggtgtgaaactgtcctgtccttaatctttatccataatcctttatat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50613864 acttacaatgtctataactaccaagtatttgaaggtagttgtgtctctttgttggtgtgaaactgtcctgtccttaatctttatccataatcctttatat 50613963  T
Q  289 aataattgatgaggtgaaattaggcttagatcggccaccatggcaacaaccaggtgatttagacactttgaaattttataaaa 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50613964 aataattgatgaggtgaaattaggcttagatcggccaccatggcaacaaccaggtgatttagacactttgaaattctataaaa 50614046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 50613671 - 50613840
Alignment:
Q  1 atgatagtttgtctttgttgtgtagctcctacctaaccttgcttcccttcttgaaccaaacatgtacttcttcatgtccattttctatcactatatcaag 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50613671 atgataatttgtctttgttgtgtagctcctacctaaccttgcttcccttcttgaaccaaacatgtacttcttcatgtccattttctatcactatatcaag 50613770  T
Q  101 ttttccttcataagcttaaagccaaggtgaatgggattttttagcatatccctttctatatatttgaagg 170  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  50613771 ttttccttcataagcttaaagccaaggtgaatggaattttttggcatatccctttctatatatttaaagg 50613840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 31425535 - 31425605
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaac--tctctcatactctcattgtactt 439  Q
    |||||||||||||||||| |||||||||||| |||||||||||||   |||||||||||||||||||||||    
T  31425535 agtaatgatatttgaacatccattttttaacaacttttgtgacaatcatctctcatactctcattgtactt 31425605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 37143122 - 37143194
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaa----ctctctcatactctcattgtactt 439  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    ||||||||||||||||||||||||    
T  37143122 agtaatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactctcattgtactt 37143194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 31931089 - 31931017
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaa----ctctctcatactctcattgtactt 439  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    |||||||||||||| |||||||||    
T  31931089 agtaatgatatttgaacatccattttttaacaacttttgtgacaattttctctctcatactcttattgtactt 31931017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 49875800 - 49875867
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaa--ctctctcatactctcattgtactt 439  Q
    |||||||||| |||| |||||||||||| |||||||||||||  |||||||||||||| |||||||||    
T  49875800 aatgatattttaacatccattttttaacaacttttgtgacaactctctctcatactcttattgtactt 49875867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 15927665 - 15927593
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaactc----tctcatactctcattgtactt 439  Q
    |||||| ||||||||||| |||||||||||| |||||||| |||||||    |||||||||||||||||||||    
T  15927665 agtaataatatttgaacatccattttttaacaacttttgtaacaactctctctctcatactctcattgtactt 15927593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 50886402 - 50886466
Alignment:
Q  375 aatgatatttgaacaccattttttaaccacttttgtgacaactctctcatactctcattgtactt 439  Q
    |||||||||||||||    |||||||| ||||  ||||||||||||||||||||||||| |||||    
T  50886402 aatgatatttgaacaatcatttttaacaacttcggtgacaactctctcatactctcattatactt 50886466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 31664625 - 31664696
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaa----ctctctcatactctcattgtactt 439  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||    |||||||||||||| |||||||||    
T  31664625 agtaatgatatttgaacatccattttttaacaacttt-gtgacaattttctctctcatactcttattgtactt 31664696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 50886194 - 50886262
Alignment:
Q  372 agtaatgatatttgaacaccattttttaaccacttttgtgacaa----ctctctcatactctcattgta 436  Q
    ||||||||||||||| || |  |||||||| |||||||||||||    |||||||||||||||||||||    
T  50886194 agtaatgatatttgatcatccatttttaacaacttttgtgacaacactctctctcatactctcattgta 50886262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 31350687 - 31350625
Alignment:
Q  361 attttataaaaagtaatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    |||||| ||| || |||||||||| |||| |||||||||||| | ||||||||||||||||||    
T  31350687 attttaaaaagagaaatgatattttaacatccattttttaacaatttttgtgacaactctctc 31350625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 23553656 - 23553589
Alignment:
Q  375 aatgatatttgaacacc-attttttaaccacttttgtgacaactc--tctcatactctcattgtactt 439  Q
    ||||||||||||||| | | |||| ||| ||||||||||||||||  ||||||||||| |||||||||    
T  23553656 aatgatatttgaacaactacttttaaacaacttttgtgacaactctctctcatactcttattgtactt 23553589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 34608124 - 34608160
Alignment:
Q  403 acttttgtgacaactctctcatactctcattgtactt 439  Q
    |||||||||||||||||||||||| |||||| |||||    
T  34608124 acttttgtgacaactctctcatacactcattatactt 34608160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 48353000 - 48353048
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| ||||    
T  48353000 aatgatatttgtacatccattttttaacaacttttgtgacaactttctc 48353048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 28982708 - 28982639
Alignment:
Q  373 gtaatgatatttgaaca-ccattttttaaccacttttgtgacaactc--tctcatactctcattgtactt 439  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  28982708 gtaatgatatttgaacatccattttttaacaacttttgtgacaactctctctcatactctcattgtactt 28982639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 354277 - 354343
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaactct--ctcatactctcattgt 435  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||||  |||||||||| |||||    
T  354277 agtaatgatgtttgaacatccattttttaacaacttttgtgacaactctctctcatactcttattgt 354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 5456918 - 5456869
Alignment:
Q  374 taatgatatttgaacac-cattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  5456918 taatgatatttgaacattcattttttaacaacttttgtgacaactctctc 5456869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 21515007 - 21514937
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaac--tctctcatactctcattgtactt 439  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||  |||||||||||||||||||||||    
T  21515007 agtaatgatatttgaacatccattttttaacaatttttgtgacaaccctctctcatactctcattgtactt 21514937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 10839556 - 10839506
Alignment:
Q  368 aaaaagtaatgatatttgaaca-ccattttttaaccacttttgtgacaact 417  Q
    |||||| ||||||||||||||| ||| |||||||| |||||||||||||||    
T  10839556 aaaaagaaatgatatttgaacaaccaatttttaacaacttttgtgacaact 10839506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 5772039 - 5771991
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || |||||||| |||||||||||    
T  5772039 aatgatatttgaacaaccattttttgacaacttttgtaacaactctctc 5771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 12172184 - 12172136
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| |||||||| ||| | ||||||||||||||||||    
T  12172184 aatgatatttgaacaaccatttttaaacaaattttgtgacaactctctc 12172136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 12416612 - 12416564
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| |||||||| ||| | ||||||||||||||||||    
T  12416612 aatgatatttgaacaaccatttttaaacaaattttgtgacaactctctc 12416564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 23754774 - 23754726
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  23754774 aatgatatttgaacaaccattttttaataacttttgtgacaactttctc 23754726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 31266301 - 31266232
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaa----ctctctcatactctcattgtactt 439  Q
    ||||||||||||||| |||||||||||| | |||||||| ||    |||||||||||| |||||||||||    
T  31266301 aatgatatttgaacatccattttttaacaatttttgtgataattctctctctcatactttcattgtactt 31266232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 33100536 - 33100488
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||| ||||    
T  33100536 aatgatatttgaacaaccattttataacaacttttgtgacaactttctc 33100488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 46859413 - 46859486
Alignment:
Q  366 ataaaaagtaatgatatttgaaca-ccattttttaaccacttttgtgacaa--ctctctcatactctcattgta 436  Q
    ||||| ||||||||||||||| || |||||||||||| |||||||||||||  |||||||||||||||||||||    
T  46859413 ataaagagtaatgatatttgagcatccattttttaacaacttttgtgacaactctctctcatactctcattgta 46859486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 18982520 - 18982589
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtgacaa----ctctctcatactctcattgta 436  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    |||||||||||||| ||||||    
T  18982520 agtaatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactcttattgta 18982589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 36775112 - 36775158
Alignment:
Q  377 tgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||| |||||||||||| |||||||||||||| |||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaaccctctc 36775158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 36775073 - 36775114
Alignment:
Q  372 agtaatgatatttgaaca-ccattttttaaccacttttgtga 412  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  36775073 agtaatgatatttgaacatccattttttaacaacttttgtga 36775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 649772 - 649820
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  649772 aatgatatttgaacaaccatttttttacaacttttgtgacaactttctc 649820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 9567028 - 9566980
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  9567028 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 9566980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 19947808 - 19947760
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  19947808 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 19947760  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 42824458 - 42824506
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    |||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  42824458 aatgatatttgatcaaccatttttaaactacttttgtgacaactctctc 42824506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 48983735 - 48983687
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  48983735 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 48983687  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 37468325 - 37468260
Alignment:
Q  375 aatgatatttgaacac-cattttttaaccacttttgtgacaactctctcatactctcattgtactt 439  Q
    ||||||||||||| |  ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37468325 aatgatatttgaagaatcatttttaaacaacttttgtgacaactctctcatactctcattgtactt 37468260  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 7438572 - 7438639
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactct--ctcatactctcattgtactt 439  Q
    ||||||||||||||| |||||||| ||| |||||| ||||||||||  ||||||||| |||| |||||    
T  7438572 aatgatatttgaacaaccatttttaaacaacttttatgacaactctctctcatactcacattctactt 7438639  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 43057068 - 43057116
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||| ||||    
T  43057068 aatgatatttgaacaaccactttttaacaacttttgtgacaactttctc 43057116  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 1981894 - 1981962
Alignment:
Q  375 aatgatatttgaacaccattttttaaccacttttgtgacaa----ctctctcatactctcattgtactt 439  Q
    ||||||||||||||| |  ||||||| ||||||||||||||    ||||||||||||||||||||||||    
T  1981894 aatgatatttgaacaaccatttttaaacacttttgtgacaactttctctctcatactctcattgtactt 1981962  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 16594443 - 16594396
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctct 421  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaactctct 16594396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 10008578 - 10008511
Alignment:
Q  375 aatgatatttgaacac-cattttttaaccacttttgtgacaactctctc--atactctcattgtactt 439  Q
    ||||||||| |||||  ||||||| ||| ||||||||||||||||||||  |||||||||||||||||    
T  10008578 aatgatattcgaacaatcatttttaaacaacttttgtgacaactctctctcatactctcattgtactt 10008511  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 25603731 - 25603668
Alignment:
Q  379 atatttgaacac-cattttttaaccacttttgtgacaactctctc--atactctcattgtactt 439  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  25603731 atatttgaacattcattttttaacgacttttgtgacaactctctcatatacactcattgtactt 25603668  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 1293153 - 1293105
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| ||||    
T  1293153 aatgatatttgtacaaccattttttaacaacttttgtgacaactttctc 1293105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 13089849 - 13089801
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  13089849 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 13089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 42225833 - 42225770
Alignment:
Q  375 aatgatatttg-aacaccattttttaaccacttttgtgacaactc--tctcatactctcattgt 435  Q
    ||||||||||| || |||||||| |||| ||||||| ||||||||  |||||||||||||||||    
T  42225833 aatgatatttgtaaaaccattttgtaacaacttttgggacaactctctctcatactctcattgt 42225770  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 54128056 - 54128124
Alignment:
Q  375 aatgatatttgaac--accattttttaaccacttttgtgacaa--ctctctcatactctcattgtactt 439  Q
    |||||||||||||   ||||||||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  54128056 aatgatatttgaaacaaccatttttaaacaacttttgtgacaactctctctcatactctcattgtactt 54128124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 51734700 - 51734631
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaact----ctctcatactctcattgtactt 439  Q
    ||||||||||||||| ||| |||| ||| |||||||||||||||    ||||||||||||||||||||||    
T  51734700 aatgatatttgaacaaccacttttaaacaacttttgtgacaactttctctctcatactctcattgtactt 51734631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 2268582 - 2268527
Alignment:
Q  367 taaaaagtaatgatatttgaacaccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||| ||||||||||||||| |  |||||||| ||||||||||||||| ||||    
T  2268582 taaaaagaaatgatatttgaacatccatttttaacaacttttgtgacaactttctc 2268527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 51255750 - 51255798
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  51255750 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 51255798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 2819256 - 2819326
Alignment:
Q  374 taatgatatttgaaca-ccattttttaaccacttttgtgacaac----tctctcatactctcattgtactt 439  Q
    |||||||||||||||| |||||||||||| |||||| |||||||    ||||||||| |||||||||||||    
T  2819256 taatgatatttgaacatccattttttaacaacttttatgacaaccatctctctcatattctcattgtactt 2819326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 48814878 - 48814827
Alignment:
Q  372 agtaatgatatttgaacac-cattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||| |||||    
T  48814878 agtaatgatatttgaacattcattttttaacaacttttgtgacaaccctctc 48814827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 9792770 - 9792839
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaact----ctctcatactctcattgtactt 439  Q
    ||||||||||||||| ||| |||| ||| |||||||||| ||||    ||||||||||||||||||||||    
T  9792770 aatgatatttgaacaaccacttttaaacaacttttgtgataactttctctctcatactctcattgtactt 9792839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 12007253 - 12007205
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaactctctc 422  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  12007253 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctc 12007205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 44255922 - 44255886
Alignment:
Q  403 acttttgtgacaactctctcatactctcattgtactt 439  Q
    |||||||||||||||||||||||| |||||| |||||    
T  44255922 acttttgtgacaactctctcatacactcattatactt 44255886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 47448830 - 47448895
Alignment:
Q  375 aatgatatttgaaca-ccattttttaaccacttttgtgacaact----ctctcatactctcattgt 435  Q
    ||||||||||||||| ||||||||| || |||||||||||||||    ||||||||||| ||||||    
T  47448830 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgt 47448895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 6587 - 6522
Alignment:
Q  375 aatgatatttgaacac-cattttttaaccacttttgtgacaac----tctctcatactctcattgt 435  Q
    |||||||||||||||  ||||||||||| ||||||||||||||    |||||||||||| ||||||    
T  6587 aatgatatttgaacaatcattttttaacaacttttgtgacaactttatctctcatactcacattgt 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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