View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_37 (Length: 434)
Name: NF1459_low_37
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Complemental strand, 8036690 - 8036289
Alignment:
| Q |
20 |
cccttcacttcatcagcttcaattttatctatccctgcaattcaatgnnnnnnntctcaacatatgtttctactcaaaatctttatagcaagcaataacc |
119 |
Q |
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| T |
8036690 |
cccttcacttcatcagcttcaattttatctatccctgcaattcaatgaaaaaaatctcaacatatgtttctactcaaaatctttatagcaagcaataaac |
8036591 |
T |
|
| Q |
120 |
atttaaaatgttaattcaatccataacaaatatagggagataatgtgtgtataatctaaatgctatggttaccttcaagagaagagacagttttgatgag |
219 |
Q |
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| T |
8036590 |
atttaaaatgttaattcaatccataacaaatatagggagataatgtgtgtataatctaaatgatatggttaccttcaagagaagagacagttttgatgag |
8036491 |
T |
|
| Q |
220 |
tttctttttgcattttggacaatcgatattaaccttcaacacagttttcttaaccatggagaaattatcaaccagctttgttgtttctgatctcactaga |
319 |
Q |
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| T |
8036490 |
tttctttttgcattttggacaatcgatattaaccttcaatacagttttcttaaccatggagaaattatcaaccagctttgttgtttctgatctcactaga |
8036391 |
T |
|
| Q |
320 |
atgtttgagt-aaatactactaatccacaaggtttttcaaactttacaataactttggtctatggtgttttcaagtagtagtattatatattatttaatg |
418 |
Q |
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| T |
8036390 |
atgtttaagtaaaatactactaatacacaaggtttttcaaattttacaataactttggtctatggtgttttcaagtagtagtattatatataaattaatg |
8036291 |
T |
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| Q |
419 |
tt |
420 |
Q |
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| T |
8036290 |
tt |
8036289 |
T |
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