View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_39 (Length: 430)
Name: NF1459_low_39
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 68 - 416
Target Start/End: Complemental strand, 9126561 - 9126213
Alignment:
| Q |
68 |
ttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtacaaataagaaaaccatgatttcacttcctaccactt |
167 |
Q |
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| T |
9126561 |
ttccaactcgttaaggaatcatcacaagatcaatgtgtttatcctgagttttgcctgtattgtacaaatcagaaaaccatgatttcgcttcctacaactt |
9126462 |
T |
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| Q |
168 |
caggtccagttccattctttgtctctgaaattgactacaagttacataatatttcattttctgaccccgacaattgccttccaaagatgttaccaaagtt |
267 |
Q |
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| T |
9126461 |
caggtccagttcaattctttgtctctgaaattgactacaagttacaaattatttcattttccgacccggacaattgccttccaaagatgttaccaaagct |
9126362 |
T |
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| Q |
268 |
taacacttcatcatttcaattttaccaatttgatacaaaattagcaacaactgtagtcttcttcaactgctcttcagttaggaatcgacacctgagaaac |
367 |
Q |
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| T |
9126361 |
taacacttcatcattccaattttacaaatttgatacaaaattagcaacaactgtagtcttcttcaactgctcttcggttaggaaacgacacctgagaaac |
9126262 |
T |
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| Q |
368 |
tacgatcagtcatcccaagagtcgcaagatacgatcacgtgtccaattt |
416 |
Q |
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| T |
9126261 |
tacgatcaattattccaagggtcacaagatatgatcacatgtccaattt |
9126213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 9071174 - 9071036
Alignment:
| Q |
18 |
agtgcaaagaatcatcttgtggacctaagcaacctcctattaaatttcccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccct---ga |
114 |
Q |
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| T |
9071174 |
agtgcagagaatcatattgtggacctaaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaatgtgtttatcctaaaga |
9071075 |
T |
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| Q |
115 |
gttttgcctatattgtac---aaataagaaaaccatgat |
150 |
Q |
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| T |
9071074 |
gttctgcctatattgtactgaaaataagaaaaccatgat |
9071036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 9087427 - 9087341
Alignment:
| Q |
68 |
ttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtac---aaataagaaaaccatgatt |
151 |
Q |
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| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaatgtgtttatcctgagttttgcttatattgtactaaaaataagagaaccatgatt |
9087341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 8866905 - 8866785
Alignment:
| Q |
12 |
atgaagagtgcaaagaatcatcttgtggacctaagcaacctcctattaaatttcccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccc |
111 |
Q |
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| T |
8866905 |
atgaagagtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaatgtgtttatcc |
8866806 |
T |
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| Q |
112 |
tgagttttgcctatattgtac |
132 |
Q |
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| T |
8866805 |
tgagttttgcctatattgtac |
8866785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 9070862 - 9070770
Alignment:
| Q |
324 |
tcttcttcaactgctcttcagttaggaatcgacacctgagaaactacgatcagtcatcccaagagtcgcaagatacgatcacgtgtccaattt |
416 |
Q |
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| T |
9070862 |
tcttcttcaactgcttttcagttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattt |
9070770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 8862986 - 8862919
Alignment:
| Q |
65 |
cccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtac |
132 |
Q |
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| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaatgtactcatcctgagttttgcctatattgtac |
8862919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 412
Target Start/End: Complemental strand, 8862719 - 8862633
Alignment:
| Q |
326 |
ttcttcaactgctcttcagttaggaatcgacacctgagaaactacgatcagtcatcccaagagtcgcaagatacgatcacgtgtcca |
412 |
Q |
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| T |
8862719 |
ttcttcaattgctcttcagttaggaaacaacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtcca |
8862633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 8866588 - 8866498
Alignment:
| Q |
326 |
ttcttcaactgctcttcagttaggaatcgacacctgagaaactacgatcagtcatcccaagagtcgcaagatacgatcacgtgtccaattt |
416 |
Q |
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| T |
8866588 |
ttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtcacaagatatgatcacctgtccaattt |
8866498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 8980134 - 8980044
Alignment:
| Q |
326 |
ttcttcaactgctcttcagttaggaatcgacacctgagaaactacgatcagtcatcccaagagtcgcaagatacgatcacgtgtccaattt |
416 |
Q |
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| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattt |
8980044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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