View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_4 (Length: 660)
Name: NF1459_low_4
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 27161640 - 27161993
Alignment:
| Q |
17 |
cattgttattgacagacggagtaccgttttgtccacgcaaggaattctattgaggaaagctagtcaatttagttttcttatttctctgtaattannnnnn |
116 |
Q |
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| T |
27161640 |
cattgttattgacagacggagtaccgttttgtccacgcaaggaattctatttaggaaagctagtcaatttagttttcttatttctctgtaattactaatt |
27161739 |
T |
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| Q |
117 |
nnnnatataaaaagtgatcactagaagaataaaataataatgaccacagttatacgtaaaaggaaagggcaatatggatggttagtaaagcaaaatatgc |
216 |
Q |
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| T |
27161740 |
ttttatataaaaagtgatcactagacgaataaaataataatgaccacagttatacgtaaaaggaaagggcaatatggatggttagtaaagcaaaatatgc |
27161839 |
T |
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| Q |
217 |
aaataagaatgatgattaaaataaaaccgaccaatgaagaagtagccatagtataagttataatttggac-nnnnnnnnnnnnncaagagacacaaaaga |
315 |
Q |
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| T |
27161840 |
aaataagaatgatgattaaaataaaaccgaccaatgaagaagtagccatagtataagttataatttggactttttaatttttttcaagagacacaaaaga |
27161939 |
T |
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| Q |
316 |
agtaggaaagaaatatagtgcatgcttggtatggaagatatgcaaatttgtggc |
369 |
Q |
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| T |
27161940 |
agtaggaaagaaatatagtgcatgcttggtatggatgatatgcaaatttgtggc |
27161993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 419 - 605
Target Start/End: Original strand, 27162042 - 27162228
Alignment:
| Q |
419 |
ttttgtattttattactcatttgagaggtggcttgttagtgcggcattcttttatgcagctcatttgactcacttgtgtttgggtcttgtggactgaatg |
518 |
Q |
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| T |
27162042 |
ttttgtattttattactcattcgagaggtggcttgttagtgcgacattcttttatgcagctcatttggctcacttgtgtttgggtcttgtggactgaacg |
27162141 |
T |
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| Q |
519 |
taacaatggttttttcaatcacaaagagaatttgattgatcagctgttgcatgatgtattggttgattaaggctgctaatggtaact |
605 |
Q |
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| T |
27162142 |
taacaatggttttttcaatcacaaggagaatttgattgaacagcagttgcatgatgtattggtggattaaggctgctaatggtaact |
27162228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 561
Target Start/End: Complemental strand, 18601858 - 18601741
Alignment:
| Q |
444 |
aggtggcttgttagtgcggcattcttttatgcagctcatttgactcacttgtgtttgggtcttgtggactgaatgtaacaatggttttttcaatcacaaa |
543 |
Q |
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| T |
18601858 |
aggttgcttgttagggcgacgttcttttatgcagctcatcttgctcacttgtgtttgggtcttgtgaactgaaagtaacaatcgtcttttcattcacaag |
18601759 |
T |
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| Q |
544 |
gagaatttgattgatcag |
561 |
Q |
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| T |
18601758 |
gagaattcgattgatcag |
18601741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 636
Target Start/End: Complemental strand, 18601710 - 18601649
Alignment:
| Q |
575 |
tattggttgattaaggctgctaatggtaactttgtgctaggtgttcaatgttggttgtcgtg |
636 |
Q |
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| T |
18601710 |
tattggtggattaaggctgctaatactaactttgtactaggtgttcatcgttggttgtcgtg |
18601649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 636
Target Start/End: Original strand, 27945870 - 27945974
Alignment:
| Q |
535 |
aatcacaaagagaatttgattgatcagctgttgcatgatgtat--tggttgattaaggctgctaatggtaactttg-tgctaggtgttcaatgttggttg |
631 |
Q |
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| T |
27945870 |
aatcacaaggaaaattcgattgatcagttgctgcataatgtaaaatggtggattaaggctgccaatgctaacttttatgctaggtgttcagcgttggttg |
27945969 |
T |
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| Q |
632 |
tcgtg |
636 |
Q |
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| T |
27945970 |
tcgtg |
27945974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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