View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_40 (Length: 428)
Name: NF1459_low_40
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 174 - 416
Target Start/End: Original strand, 24482516 - 24482760
Alignment:
| Q |
174 |
tgcaattcagcggctgcaaattgctaaattataaatatctgttgacttccttcaaaaagtattttttgactaacattattttatcttaatagaaaatata |
273 |
Q |
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| T |
24482516 |
tgcaactcaacggctgcaaattgctaaattataaatatttgttgacttccttcaaaaagtattttttgactaacattattttatcttaatagaaaatata |
24482615 |
T |
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| Q |
274 |
ttttatgctagaaaagttctatagttgaaaatcatgcataaacaattnnnnnnnnntctttttattttgactcaaacggataaataattc-ttttattat |
372 |
Q |
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| T |
24482616 |
ttttatgctagaaaagttctgtagttgaaaatcatgcataaacaattaaaaaaaaatc-ttttattttgactcaaacggataaatgattctttttattat |
24482714 |
T |
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| Q |
373 |
caaaaaattcaacatacagatattagt--cacacattgtatagaat |
416 |
Q |
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| T |
24482715 |
caaaaaattcaacatacagatattagtcacacacattgtatagaat |
24482760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 24482346 - 24482470
Alignment:
| Q |
19 |
ataccgacttttgaaaattcatatttgcatgtatacattttatgacatgattgatattgatgcatcttgcttgaggaaaaagatatgcatataacttgcg |
118 |
Q |
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| T |
24482346 |
ataccgacttttgaaaattcatatttgcatgtatacattttatgacatgattgatattgatgcatcttgcttgaggaaaaagatatgcatataacttgcg |
24482445 |
T |
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| Q |
119 |
gaagaagaagatatcgtgataatgtttt |
146 |
Q |
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| T |
24482446 |
---gaagaagatattgtgataatgtttt |
24482470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 24461991 - 24462153
Alignment:
| Q |
242 |
actaacattattttatcttaatagaaaatatattttatgctagaaaagttctatagttgaaaatcatgcataaacaattnnnnnnnnntctttttatttt |
341 |
Q |
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| T |
24461991 |
actaatattattttaacgtaatagaaaatatattttatgctagaaaagttttgtagtggaaaatcaagcataaacaatt-gaaaaaaatctttttatttt |
24462089 |
T |
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| Q |
342 |
gactcaaacggataaataattcttttattatcaaaaaattcaacatacagatattagtcacaca |
405 |
Q |
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| T |
24462090 |
gactcaaataaataaataattcttttattgtcaaaaaatacaacgtacaagtatcagtcacaca |
24462153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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