View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_42 (Length: 421)

Name: NF1459_low_42
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_42
NF1459_low_42
[»] chr2 (3 HSPs)
chr2 (1-256)||(42795848-42796105)
chr2 (305-405)||(42795699-42795799)
chr2 (78-178)||(19906299-19906400)
[»] chr6 (2 HSPs)
chr6 (84-178)||(8645159-8645254)
chr6 (200-251)||(8645091-8645142)
[»] chr5 (6 HSPs)
chr5 (84-178)||(4425386-4425480)
chr5 (84-172)||(39263655-39263743)
chr5 (84-175)||(42480366-42480456)
chr5 (78-176)||(4432832-4432930)
chr5 (212-251)||(4425316-4425355)
chr5 (213-249)||(42480298-42480334)
[»] chr7 (2 HSPs)
chr7 (84-146)||(13471185-13471247)
chr7 (104-175)||(13471380-13471451)
[»] chr1 (1 HSPs)
chr1 (84-178)||(46830272-46830366)
[»] chr4 (2 HSPs)
chr4 (90-167)||(5051803-5051881)
chr4 (95-175)||(44550002-44550082)
[»] chr8 (1 HSPs)
chr8 (84-173)||(38432759-38432848)
[»] chr3 (4 HSPs)
chr3 (84-176)||(31180693-31180786)
chr3 (90-154)||(14417788-14417852)
chr3 (213-248)||(14418069-14418104)
chr3 (84-154)||(36189275-36189344)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42796105 - 42795848
Alignment:
Q  1 taaaaaacttggtaaagaaagagggcaaatagagtatatactccctttgat--tgaatataagcaacaaattttattttacacattttaagaaaattagt 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  42796105 taaaaaacttggtaaagaaagagggcaaatagagtatatattccctttgatcttgaatataagcaacaaattttattttacactttttaagaaaattagt 42796006  T
Q  99 tggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatgnnnnnnnnnnnnnnnnntca 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                 |||    
T  42796005 tggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcatccatgagaacttgttccatgaaaagaaaaaaataaaatca 42795906  T
Q  199 aattaattaaacgataatttaggaatagtaacattaaatatgatagaagttgtcaaca 256  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42795905 cattaattaaaggataatttaggaatagtaacattaaatatgatagaagttgtcaaca 42795848  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 42795799 - 42795699
Alignment:
Q  305 atattcaagactaaagggagtaattaattgcataccacggtggagaattatctttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42795799 atattcaagactaaagggagtaattaattgcataccacggtggaaaattatctttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttt 42795700  T
Q  405 t 405  Q
    |    
T  42795699 t 42795699  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 19906299 - 19906400
Alignment:
Q  78 acacattttaagaaaattagttggtgtcatttatttctctcaaaattat-aaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 176  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| |||   || ||||||||||||    
T  19906299 acaccttttaagaaaattagttggtgttatttatttctctcaaagttataaaaaaatacaattgcaatttctaaattaccctttgtgcgaacttgttcca 19906398  T
Q  177 tg 178  Q
    ||    
T  19906399 tg 19906400  T

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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 8645254 - 8645159
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattat-aaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 178  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||  ||| ||||||||||||||    
T  8645254 tttaagaaaattagttggtgtcatttatttcactcaaagttataaaaaaatacaattgtaatttctaaattacccttaatgggaacttgttccatg 8645159  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 8645142 - 8645091
Alignment:
Q  200 attaattaaacgataatttaggaatagtaacattaaatatgatagaagttgt 251  Q
    ||||||| || | ||||||||||| |||||||||||||||||||||||||||    
T  8645142 attaatttaagggtaatttaggaagagtaacattaaatatgatagaagttgt 8645091  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 4425480 - 4425386
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 178  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||||| || || ||||||||||||||||| ||||| |||||||||||||    
T  4425480 tttaagaaaatgagttggtgtcgtttatttctctcaaagtcataaaaaatataactgcaatttctaaattatccttcatgaaaacttgttccatg 4425386  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 39263655 - 39263743
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgt 172  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||  |||| ||||||||    
T  39263655 tttaagaaaattgattgatgtcatttatttctctcaaaattataaagaatgcaattgtaatttcaaaattacccgtcatgggaacttgt 39263743  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 42480456 - 42480366
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 175  Q
    ||||| |||||||||| |||||||| |||||| | ||| |||||||||||||||||||||||| ||||||||| | ||||  ||||||||||    
T  42480456 tttaacaaaattagtttgtgtcatt-atttcttttaaagttataaaaaatacaattgtaatttttaaattatcattcatggaaacttgttcc 42480366  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 4432930 - 4432832
Alignment:
Q  78 acacattttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 176  Q
    ||||||||||| || ||| |||| |||||||||||||||| ||| ||||||||| |||||||  ||||||||||||| |||  || | |||||||||||    
T  4432930 acacattttaaaaacatttgttgatgtcatttatttctcttaaagttataaaaattacaattacaatttctaaattaccctttataaaaacttgttcca 4432832  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 4425355 - 4425316
Alignment:
Q  212 ataatttaggaatagtaacattaaatatgatagaagttgt 251  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4425355 ataatttaggaatagtaacattaaatatgataaaagttgt 4425316  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 42480334 - 42480298
Alignment:
Q  213 taatttaggaatagtaacattaaatatgatagaagtt 249  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  42480334 taatttatgaataataacattaaatatgatagaagtt 42480298  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 13471247 - 13471185
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaattt 146  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13471247 tttaaaaaaattaataggtgtcatttatttctctcaaaattataaaaaatacaattgtaattt 13471185  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 13471451 - 13471380
Alignment:
Q  104 tcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 175  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  13471451 tcatttatttctcttaaagttataaaaagtacaattgtaatttctaaattacccttcatgggaacttgttcc 13471380  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 46830272 - 46830366
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 178  Q
    ||||| ||||||||||| | |||||||||||| |||||||||||||  |||||||| || ||| ||||| ||||| |||||||||||||||||||    
T  46830272 tttaaaaaaattagttgatatcatttatttctttcaaaattataaaggatacaattatactttttaaatgatccttcatgagaacttgttccatg 46830366  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 5051803 - 5051881
Alignment:
Q  90 aaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta-tcctccatgagaa 167  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||  ||||||||||||    
T  5051803 aaaactagttggtgtcatttatttttctcaaagttataaagaatacaactgtaatttctaaattacccctccatgagaa 5051881  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 44550082 - 44550002
Alignment:
Q  95 tagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 175  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||| |||||||  |||||| ||  ||| ||||||||||||    
T  44550082 tagttagtgtcatttaattctctcaaaattataaaatatacaatagtaattttcaaattaccccgcataagaacttgttcc 44550002  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 38432848 - 38432759
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgtt 173  Q
    |||||||||||||  || | ||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||  |||| |||||||||    
T  38432848 tttaagaaaattaagtgatctcatttatttccctcaaagttataaagaatacaattgtaatttctaaattacccctcatgggaacttgtt 38432759  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 31180786 - 31180693
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattata-aaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 176  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||  ||||||  ||  ||||||||||| ||||    
T  31180786 tttaagaaaattaattggtgtcatttatttctctcaaagttatataaaaatacaattataattttcaaattactctttatgagaacttgatcca 31180693  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 14417788 - 14417852
Alignment:
Q  90 aaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta 154  Q
    |||||||||||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||||    
T  14417788 aaaattagttggtgtcgtttatttttttcaaagttataaaaaatacaattgtaacttttaaatta 14417852  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 14418069 - 14418104
Alignment:
Q  213 taatttaggaatagtaacattaaatatgatagaagt 248  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14418069 taatttaggaataataacattaaatatgatagaagt 14418104  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 36189275 - 36189344
Alignment:
Q  84 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta 154  Q
    |||||||||||||||||||| |||||||||  | |||| |||| || |||| |||| ||||||||||||||    
T  36189275 tttaagaaaattagttggtg-catttattttccacaaagttatgaagaataaaattctaatttctaaatta 36189344  T

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