View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_44 (Length: 418)
Name: NF1459_low_44
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_44 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 92089 - 92461
Alignment:
| Q |
15 |
aatatgcatgcaattagggtttttgttatttctttcttttcatgctgtgcagctatactaaaccctaaacttaacaacaactcttttccaatttttggta |
114 |
Q |
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| T |
92089 |
aatatgcatgcaattagggtttatgttatttctttcttttcatgctgtgcagctatactaaaccctaaacttaacaacaactcttttccaatttttggta |
92188 |
T |
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| Q |
115 |
tcttcatacacttcttccactcaatccatggtatatcttccctcactcctttaaacaagaacacagttgttacatatatcttctcctcagttctactcca |
214 |
Q |
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| T |
92189 |
tcttcatacacttcttccactcaatccatggtatatcttccctcactcctttaaacaagaacacagttgttacatatatcttctcctcagttctactcca |
92288 |
T |
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| Q |
215 |
ccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataactttatttaaattatactctaatatttactcatcataattttacagtg |
314 |
Q |
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| T |
92289 |
ccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataactttatttaaattatactctaatatttactcatcataattttacagtg |
92388 |
T |
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| Q |
315 |
tcgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctttgaggtaaggggagaga |
387 |
Q |
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| T |
92389 |
ccgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctttgaggtaaggggagaga |
92461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 40874193 - 40873821
Alignment:
| Q |
15 |
aatatgcatgcaattagggtttttgttatttctttcttttcatgctgtgcagctatactaaaccctaaacttaacaacaactcttttccaatttttggta |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40874193 |
aatatgcatgcaattagggtttatgttatttctttcttttcatgctgtgcagctatactaaaccctaaacttaacaacaactcttttccaatttttggta |
40874094 |
T |
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| Q |
115 |
tcttcatacacttcttccactcaatccatggtatatcttccctcactcctttaaacaagaacacagttgttacatatatcttctcctcagttctactcca |
214 |
Q |
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| T |
40874093 |
tcttcatacacttcttccactcaatccatggtatatcttccctcactcctttaaacaagaacacagttgttacatatatcttctcctcagttctactcca |
40873994 |
T |
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| Q |
215 |
ccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataactttatttaaattatactctaatatttactcatcataattttacagtg |
314 |
Q |
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| T |
40873993 |
ccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataactttatttaaattatactctaatatttactcatcataattttacagtg |
40873894 |
T |
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| Q |
315 |
tcgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctttgaggtaaggggagaga |
387 |
Q |
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| T |
40873893 |
ccgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctttgaggtaaggggagaga |
40873821 |
T |
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