View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_46 (Length: 411)
Name: NF1459_low_46
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 2400793 - 2400602
Alignment:
| Q |
19 |
taaggatatgtctagtcgaagatcaaggcaacaatcaggtgggtctacacggatttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaactt |
118 |
Q |
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| T |
2400793 |
taaggatatgtctagtcgaaggtcaaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaactt |
2400694 |
T |
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| Q |
119 |
gttcctgagattcgtaataggcaatctgacaaggtactatagctatttcaatcactctatagtatagatacacactattcataaggatgttaaagtt |
215 |
Q |
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| T |
2400693 |
gttcctgagattcgtaataggcgctctgacaaggtactatagctatttcaatcactct-----atagatacacactattcataaggatgttaaagtt |
2400602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
71 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
154 |
Q |
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| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
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