View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_49 (Length: 406)
Name: NF1459_low_49
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 76 - 392
Target Start/End: Complemental strand, 33605927 - 33605611
Alignment:
| Q |
76 |
ggattgaacaaagtgactaaccaggggatatagaaatggatcaaaccaaaagctagtgaaagaggaagtagtttgggagggtcaggtttgttgagtaaca |
175 |
Q |
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| T |
33605927 |
ggattgaacaaagtgactaaccaggggatatggaaatggatcaaaccaaaagctagtgaaagaggaagtagtttgggagggtcaggtttgttgagtaaca |
33605828 |
T |
|
| Q |
176 |
ataaaactcatagaaagtgatggaaaataaaggaaaaggagaaaaaatgcataagctagaatatagctttcttattcaattacttgagaatgaagtcata |
275 |
Q |
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| T |
33605827 |
agaaaacacatagaaagtgatggaaaataaaggaaaaggagaaaaaatgcataagctagaatatagctttcttattcaattacttgagaatgaagtcata |
33605728 |
T |
|
| Q |
276 |
acaactatttatagagtttctatttgatagactacgctaagctactgtatactctagcttataggattgcatcctactccataacaaactcagaagttag |
375 |
Q |
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| T |
33605727 |
acaactatttatagagtttctatttgatagactacgctaagctactgtatactctatcttataggattgcatccttctccataacaaactcagaagttag |
33605628 |
T |
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| Q |
376 |
ttaattacaactgtttt |
392 |
Q |
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||||||||||||||||| |
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| T |
33605627 |
ttaattacaactgtttt |
33605611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33606002 - 33605970
Alignment:
| Q |
1 |
tcatcattaattgaaagtgcaatcatagttgac |
33 |
Q |
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| T |
33606002 |
tcatcattaattgaaagtgcaatcatagttgac |
33605970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 33447947 - 33448159
Alignment:
| Q |
166 |
ttgagtaacaataaaactcatagaaagtgatggaaaataaaggaaaaggagaaaaaatgcataagctagaatatagctt-tcttattcaattacttgaga |
264 |
Q |
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||||||||||| ||| ||||||||| || | |||||| | |||||| ||| |||||| | ||||||||| ||||||| | ||||| ||||||||| || |
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| T |
33447947 |
ttgagtaacaaggaaaatcatagaaactggtagaaaatggaagaaaag-agagaaaatgaagaagctagaaaatagcttgtattattaaattacttgtga |
33448045 |
T |
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| Q |
265 |
atgaagtcataacaactatttatagagtttctatttgatagactacgctaagctactgtatactctagcttataggattgcatcctactccataacaaac |
364 |
Q |
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||| || || |||| ||||||||||||| |||||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||| | |||||||||| |
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| T |
33448046 |
atggagcaattacaagtatttatagagttcctatttgatagactacactaagctattgtatacgctatcttataggattgtatccttcatcataacaaac |
33448145 |
T |
|
| Q |
365 |
tcagaagttagtta |
378 |
Q |
| |
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|| |||||||||| |
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| T |
33448146 |
tctaaagttagtta |
33448159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 3931605 - 3931471
Alignment:
| Q |
165 |
gttgagtaacaataaaactcatagaaagtgatggaaaataaaggaaaaggagaaaaaatgcataagctagaatatagctttcttattcaattacttgaga |
264 |
Q |
| |
|
|||||||||||| |||||| | ||||||||| |||||| | ||||| |||| |||||||| |||||| || |||||||||||||| | ||||| |||| |
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| T |
3931605 |
gttgagtaacaaggaaactcgtggaaagtgatagaaaattagagaaaacgagagaaaatgcagaagctataaaatagctttcttatttagttactcgaga |
3931506 |
T |
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| Q |
265 |
atgaagtcataacaactatttatagagtttctatt |
299 |
Q |
| |
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|||||||||| |||| ||||||| || |||||||| |
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| T |
3931505 |
atgaagtcattacaagtatttatggactttctatt |
3931471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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