View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_low_53 (Length: 400)
Name: NF1459_low_53
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 37834966 - 37835343
Alignment:
| Q |
1 |
atacgctgctcatataaatatattcatacagaaattcaatttggattgcatcatgctcacccatagtagttagttatattttcaattgaacaacaatata |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834966 |
atacgctactcatataaatatattcatacagaaattcaatttggattggatcatgctcacccatagtagttagttatattttcaattgaacaacaatata |
37835065 |
T |
|
| Q |
101 |
aatatattattaattaatacagaatacagatggctactcatatttttaaaaggttggaacaaatcacaaattcaagtcaatgnnnnnnnnnnnnnnnnct |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37835066 |
aatatattattaattaatacataatacagatggctactcatatttttaaaaggttggaacaaatcacaaattcaagtcaatggaaaaaaaaaaaaaa-ct |
37835164 |
T |
|
| Q |
201 |
tacatcaataagactgatgatgcctgataatgcatcacagtggataaactcaattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37835165 |
tacatcaataagactgatgatgcctgataatgcatcacagtggataaactcaattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcg |
37835264 |
T |
|
| Q |
301 |
tacgcttctttatccttatcaattcctattacctgaaattagagaaatttattaataactacactttattctaatttat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37835265 |
tacgcttctttatccttatcaattcctattacctgaaattagagaaatttattaataactacactttattctaatttat |
37835343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University