View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_54 (Length: 399)

Name: NF1459_low_54
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_54
NF1459_low_54
[»] chr1 (16 HSPs)
chr1 (15-399)||(11890494-11890878)
chr1 (21-381)||(11881146-11881506)
chr1 (39-381)||(11903646-11903988)
chr1 (36-389)||(52819808-52820161)
chr1 (18-72)||(11890953-11891007)
chr1 (18-72)||(11881719-11881773)
chr1 (18-72)||(11891085-11891139)
chr1 (18-72)||(11881587-11881641)
chr1 (18-72)||(11881851-11881905)
chr1 (18-72)||(11904048-11904102)
chr1 (18-72)||(11904180-11904234)
chr1 (18-72)||(11904312-11904366)
chr1 (18-72)||(11904444-11904498)
chr1 (18-72)||(11904576-11904630)
chr1 (18-72)||(11904708-11904762)
chr1 (29-66)||(11882673-11882710)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 11890878 - 11890494
Alignment:
Q  15 ttatacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaag 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11890878 ttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaag 11890779  T
Q  115 cataagcaaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaaggg 214  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11890778 cataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaaggg 11890679  T
Q  215 tgaacccttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatc 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890678 tgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatc 11890579  T
Q  315 ttagttttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataacaaatttgaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890578 ttagttttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataacaaatttgaa 11890494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 11881506 - 11881146
Alignment:
Q  21 ttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataag 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  11881506 ttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataag 11881407  T
Q  121 caaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacc 220  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11881406 caaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacc 11881307  T
Q  221 cttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagtt 320  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11881306 cttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtt 11881207  T
Q  321 ttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctg 381  Q
    || || ||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||    
T  11881206 tttccataagccttgacaattttgctcccggctttgcatgtcacctcaacaacagctcctg 11881146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 39 - 381
Target Start/End: Complemental strand, 11903988 - 11903646
Alignment:
Q  39 ggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctttga 138  Q
    |||||||||| |  || |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11903988 ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga 11903889  T
Q  139 gcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 238  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903888 gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 11903789  T
Q  239 ggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatg 338  Q
    || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||      
T  11903788 ggtagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgaca 11903689  T
Q  339 attttgctcccggctttgcatgtcacttcaacaacagcacctg 381  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  11903688 attttgctcccggctttgcatgtcacctcaacaacagctcctg 11903646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 36 - 389
Target Start/End: Original strand, 52819808 - 52820161
Alignment:
Q  36 ggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctt 135  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||| || || ||||||||||   |||| ||||| |||||||| || ||||||||||| |    
T  52819808 ggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagcct 52819907  T
Q  136 tgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcata 235  Q
    ||||||| || || ||||||||||| ||||| |    ||| |  ||||| |  || ||||| ||||||||||||||||| ||  | ||||||||||||||    
T  52819908 tgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcata 52820007  T
Q  236 aagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttg 335  Q
     ||    || || |||||    ||||||||||| ||||||| |||||    || |||||||||||||||||||||  |||||||||||||||||||||||    
T  52820008 tagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttg 52820107  T
Q  336 atgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataa 389  Q
    ||||| || || || ||||||||| | || ||||||||||||||| ||||||||    
T  52820108 atgatgttccttccagctttgcatttgacctcaacaacagcacctatcccataa 52820161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11891007 - 11890953
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891007 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881773 - 11881719
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11881773 tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11891139 - 11891085
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11891139 tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881641 - 11881587
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11881641 tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881905 - 11881851
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11881905 tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904102 - 11904048
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11904102 tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904234 - 11904180
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  11904234 tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904366 - 11904312
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  11904366 tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904498 - 11904444
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  11904498 tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904630 - 11904576
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  11904630 tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904762 - 11904708
Alignment:
Q  18 tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 72  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  11904762 tacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
Q  29 tggtgcgggaggtggaggtgatttgtagtagtaaggag 66  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  11882710 tggtgagggaggtggaggtgatttgtaatagtaaggag 11882673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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