View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_55 (Length: 397)

Name: NF1459_low_55
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_55
NF1459_low_55
[»] chr5 (11 HSPs)
chr5 (18-359)||(42147955-42148294)
chr5 (259-377)||(11607539-11607657)
chr5 (259-377)||(33858543-33858661)
chr5 (268-377)||(19357267-19357375)
chr5 (261-377)||(1826309-1826425)
chr5 (261-346)||(39570079-39570164)
chr5 (261-377)||(33271664-33271780)
chr5 (268-327)||(9827845-9827904)
chr5 (292-377)||(10292954-10293038)
chr5 (272-377)||(29990023-29990129)
chr5 (272-377)||(38010618-38010724)
[»] chr7 (8 HSPs)
chr7 (259-383)||(35341584-35341708)
chr7 (275-377)||(48072451-48072553)
chr7 (275-377)||(32694575-32694677)
chr7 (268-377)||(48250211-48250322)
chr7 (334-372)||(31306878-31306916)
chr7 (172-256)||(30616772-30616857)
chr7 (309-366)||(40856943-40857000)
chr7 (261-316)||(40856481-40856536)
[»] chr3 (12 HSPs)
chr3 (259-383)||(44380302-44380426)
chr3 (268-372)||(35094605-35094709)
chr3 (268-377)||(33509737-33509846)
chr3 (268-377)||(37742782-37742891)
chr3 (261-357)||(47426400-47426496)
chr3 (261-372)||(17466323-17466434)
chr3 (272-377)||(31187074-31187180)
chr3 (272-377)||(47186236-47186342)
chr3 (272-328)||(42664734-42664791)
chr3 (272-324)||(50934561-50934614)
chr3 (280-323)||(34029349-34029393)
chr3 (261-345)||(39498707-39498790)
[»] chr2 (9 HSPs)
chr2 (268-372)||(23863813-23863917)
chr2 (268-377)||(34392086-34392195)
chr2 (270-383)||(4779644-4779757)
chr2 (268-377)||(25275627-25275735)
chr2 (271-372)||(4775694-4775796)
chr2 (268-377)||(41095791-41095900)
chr2 (267-315)||(21604015-21604063)
chr2 (271-371)||(7381752-7381851)
chr2 (333-377)||(21606161-21606205)
[»] chr4 (14 HSPs)
chr4 (268-370)||(35869583-35869685)
chr4 (261-368)||(21260844-21260951)
chr4 (261-362)||(33249394-33249495)
chr4 (261-372)||(22343387-22343498)
chr4 (268-367)||(51811971-51812070)
chr4 (268-377)||(12473761-12473870)
chr4 (268-377)||(12528170-12528279)
chr4 (295-371)||(55590555-55590631)
chr4 (303-383)||(1796642-1796722)
chr4 (280-330)||(33174584-33174632)
chr4 (272-328)||(52012839-52012896)
chr4 (268-305)||(52910126-52910163)
chr4 (325-371)||(35781023-35781069)
chr4 (272-323)||(9799421-9799473)
[»] chr6 (4 HSPs)
chr6 (268-377)||(5403881-5403990)
chr6 (275-377)||(1211849-1211951)
chr6 (178-256)||(8982621-8982702)
chr6 (266-367)||(32644852-32644952)
[»] scaffold0519 (1 HSPs)
scaffold0519 (268-372)||(11251-11355)
[»] chr8 (7 HSPs)
chr8 (268-372)||(11254038-11254142)
chr8 (271-377)||(24337835-24337941)
chr8 (261-377)||(41179568-41179684)
chr8 (261-344)||(4708345-4708428)
chr8 (268-372)||(18168442-18168547)
chr8 (268-372)||(18631999-18632104)
chr8 (272-327)||(1514864-1514920)
[»] chr1 (8 HSPs)
chr1 (259-359)||(8462176-8462276)
chr1 (268-372)||(32676193-32676297)
chr1 (280-372)||(29119334-29119426)
chr1 (268-377)||(2569094-2569202)
chr1 (283-383)||(46435464-46435564)
chr1 (272-377)||(8809644-8809750)
chr1 (269-303)||(3688917-3688951)
chr1 (268-304)||(25161366-25161402)
[»] scaffold0032 (1 HSPs)
scaffold0032 (272-372)||(34255-34353)
[»] scaffold0229 (1 HSPs)
scaffold0229 (275-377)||(13010-13113)
[»] scaffold0263 (1 HSPs)
scaffold0263 (268-319)||(23162-23213)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 42147955 - 42148294
Alignment:
Q  18 aaaaatgtgttatcgaaagatggttgaacggtttttaacaaaacttgagtagttagatttctagatatcactcatccaacatgnnnnnnnnnnnnnnnnt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |    
T  42147955 aaaaatgtgttatc-aaagatggttgaacggtttttaacaaaacttgagtagttagatttctagatatcactcatccaacatgaacaatttttt-----t 42148048  T
Q  118 tgtccggaagaacatgaacaacttattttacggtaaataatatcaagtaa--------ttgacggtggcggatcttaactaaaaatgtatgggagccaaa 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||         ||||| ||||||||||||||||||||||||  ||||||||||    
T  42148049 tgtccggaagaacatgaacaacttattttacagtaaataatatcaactatattagtgtttgacagtggcggatcttaactaaaaatgtgggggagccaaa 42148148  T
Q  210 aaattgtaacttatatatacaagttgtttcataaaatagacataaataaatagtgagtcacctaccaatattactttataaatgttttatttgatatact 309  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    |||| ||||||||||| |||||||||||||||||||||||||||| |    
T  42148149 aaattgtaacttatatatacaagctgtttcataaaatagacagaaataa----tgagccacctaccaatgttactttataaatgttttatttgatatatt 42148244  T
Q  310 tttttaaagggtgtaccacgttgcacattctaattggacaatgatatata 359  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  42148245 tttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 11607657 - 11607539
Alignment:
Q  259 atagtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatat 358  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||| |||||    
T  11607657 atagtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtgccacgggccacattctaattggacaatggtatat 11607558  T
Q  359 atcattatggtacataagt 377  Q
    |||||||||||||| ||||    
T  11607557 atcattatggtacacaagt 11607539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 33858661 - 33858543
Alignment:
Q  259 atagtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatat 358  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| ||||| |||||    
T  33858661 atagtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattctaattgggcaatggtatat 33858562  T
Q  359 atcattatggtacataagt 377  Q
    | |||||||||||| ||||    
T  33858561 accattatggtacacaagt 33858543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 19357375 - 19357267
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||  ||||||||||||||||||||||||||| |||||||    
T  19357375 cacctaccaatattactttataaatgctttatttgatata-ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatg 19357277  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  19357276 gtacacaagt 19357267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 1826309 - 1826425
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| ||||||||||||||||||||| || ||| ||||||||||||| ||||||||||  ||| |||| | ||||||| |||||| ||||||||||||||    
T  1826309 agtgtgtcacctaccaatattactttgtagatgctttatttgatatatttttttaaagtatgtgccacatggcacattttaattgaacaatgatatatat 1826408  T
Q  361 cattatggtacataagt 377  Q
    ||||||| |||| ||||    
T  1826409 cattatgatacacaagt 1826425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 39570164 - 39570079
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattgg 346  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  || |||||||||||    
T  39570164 agtgtgtcacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 33271664 - 33271780
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| |||| ||| |||| |||||| ||||||| ||||||||||||| ||||||||||| ||  |||||| ||||||||||||||| ||||  ||||||     
T  33271664 agtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgccacgtggcacattctaattgggcaatagtatatac 33271763  T
Q  361 cattatggtacataagt 377  Q
    |||||||||||||||||    
T  33271764 cattatggtacataagt 33271780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 9827845 - 9827904
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtacca 327  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||||    
T  9827845 cacctaccaatattactttataaatattttatttgatatatcttttttaagggtgtacca 9827904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 10292954 - 10293038
Alignment:
Q  292 tgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacataagt 377  Q
    |||||||||||||||  ||||||||||||||| |||||| |||||   ||||||| ||||| |||||| |||||||||||| ||||    
T  10292954 tgttttatttgatatt-ttttttaaagggtgtgccacgtggcacaccttaattggccaatgttatataacattatggtacacaagt 10293038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 29990023 - 29990129
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||| |||| |  ||||   |||||||  |||| |||||| ||| ||||||    
T  29990023 taccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggta 29990122  T
Q  371 cataagt 377  Q
    || ||||    
T  29990123 cacaagt 29990129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 38010724 - 38010618
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    ||||||| |||||||||||||  |||||||||||||  |||||||||| |||| |||| | |||||   |||||||  |||| |||||| ||| ||||||    
T  38010724 taccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 38010625  T
Q  371 cataagt 377  Q
    || ||||    
T  38010624 cacaagt 38010618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 35341584 - 35341708
Alignment:
Q  259 atagtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatat 358  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  35341584 atagtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattctaattggacaatgatatat 35341683  T
Q  359 atcattatggtacataagtcttatc 383  Q
    |||||||||||| |||||| |||||    
T  35341684 atcattatggtagataagtgttatc 35341708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 48072451 - 48072553
Alignment:
Q  275 caatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacata 374  Q
    |||| ||| ||||||||| ||||||||||| || ||||||||||||||| |||||| ||||||||||||||| ||||| |||||| |||||||||||| |    
T  48072451 caatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacaca 48072550  T
Q  375 agt 377  Q
    |||    
T  48072551 agt 48072553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 32694677 - 32694575
Alignment:
Q  275 caatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacata 374  Q
    |||| |||||||||||||  ||||||||||||| ||||||||||||||| ||||||  |||||||||||| | ||||| |||||| |||||| ||||| |    
T  32694677 caatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgacacattctaattaggcaatggtatataccattatagtacaca 32694578  T
Q  375 agt 377  Q
    |||    
T  32694577 agt 32694575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 48250211 - 48250322
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtac--cacgttgcacattctaattggacaatgatatatatcatta 365  Q
    ||||||||||| |||||||||| ||| ||||||||||||  ||||||||||||| | |  || ||  |||||||||||||||||||| |||||| |||||    
T  48250211 cacctaccaatgttactttatagatgctttatttgatatttttttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccatta 48250310  T
Q  366 tggtacataagt 377  Q
    ||||||| ||||    
T  48250311 tggtacacaagt 48250322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 31306916 - 31306878
Alignment:
Q  334 acattctaattggacaatgatatatatcattatggtaca 372  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31306916 acattctaattggacaatgatatatatcattatggtaca 31306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 30616772 - 30616857
Alignment:
Q  172 cggtggcggatcttaactaaaaatgt-atgggagccaaaaaattgtaacttatatatacaagttgtttcataaaatagacataaat 256  Q
    |||||||||||||| | ||||||||| | ||| |||||| || | |||||  ||||||||||||||||||||||||||||| ||||    
T  30616772 cggtggcggatcttgattaaaaatgttaggggtgccaaataaatttaactcctatatacaagttgtttcataaaatagacacaaat 30616857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 40856943 - 40857000
Alignment:
Q  309 ttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattat 366  Q
    ||||||||||||||| |||| |  ||||||||||||||||||||||||||| ||||||    
T  40856943 ttttttaaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 40856481 - 40856536
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaa 316  Q
    |||| ||||||||||||| ||| |||||| |||||||||||||| || ||||||||    
T  40856481 agtgtgtcacctaccaatgttattttatagatgttttatttgatgtatttttttaa 40856536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 44380302 - 44380426
Alignment:
Q  259 atagtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatat 358  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||    
T  44380302 atagtgtgtcacctatcaatattactttataaatgctttatttgatatacttttttaaagggtgtgccacgtgacacattctaattggacaatggtatat 44380401  T
Q  359 atcattatggtacataagtcttatc 383  Q
    | |||||||||||| |||| |||||    
T  44380402 accattatggtacacaagtgttatc 44380426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 35094605 - 35094709
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||  |||||  ||||||||||||||||||||||| ||| |||||||    
T  35094605 cacctaccaatgttactttataaatattttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccattatg 35094704  T
Q  368 gtaca 372  Q
    |||||    
T  35094705 gtaca 35094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 33509737 - 33509846
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    |||||||||||||||||||||| ||| |||||||||| || ||||||||||| ||| |||| | ||||||||||||| |||||||||||||| ||||||     
T  33509737 cacctaccaatattactttatagatgctttatttgatgtatttttttaaaggatgtgccacatggcacattctaattagacaatgatatataccattatt 33509836  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  33509837 gtacacaagt 33509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 37742782 - 37742891
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||| |||  |||| ||||||||||||| |||||||||| |||| |||||| ||||||| ||||||| ||||| |||||| |||||||    
T  37742782 cacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgtgccacgtggcacattataattgggcaatggtatataccattatg 37742881  T
Q  368 gtacataagt 377  Q
     |||| ||||    
T  37742882 ttacacaagt 37742891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 47426400 - 47426496
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatata 357  Q
    |||| |||||||| |||| |||||||||| ||| ||||||||||||| ||||||||||||||| |||| | | ||||||||||||| ||||| ||||    
T  47426400 agtgtgtcacctatcaatgttactttatagatgctttatttgatatatttttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 17466323 - 17466434
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| |||||||| |||| |||||||||||||| |||| |||||||| ||||||||||||| | ||||||  |||| ||||| ||  ||||| ||||||     
T  17466323 agtgtgtcacctatcaatgttactttataaatgatttagttgatatatttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatatac 17466422  T
Q  361 cattatggtaca 372  Q
    ||||| ||||||    
T  17466423 cattacggtaca 17466434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 31187180 - 31187074
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||| |||| |  ||||   |||||||  |||| |||||| ||| ||||||    
T  31187180 taccaatgttactttataaatgttttatttgatatatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggta 31187081  T
Q  371 cataagt 377  Q
    || ||||    
T  31187080 cacaagt 31187074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 47186236 - 47186342
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    ||||||| |||||||||||||  |||||||||||||  |||||||||| |||| |||| | |||||   |||||||  |||| |||||| ||| ||||||    
T  47186236 taccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 47186335  T
Q  371 cataagt 377  Q
    || ||||    
T  47186336 cacaagt 47186342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 42664734 - 42664791
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccac 328  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||||||| |||| ||||    
T  42664734 taccaatgttattttataaatgttttatttgatatatgttttttaaagtgtgtgccac 42664791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 50934561 - 50934614
Alignment:
Q  272 taccaatattactttataaatgttttatttgatatacttt-tttaaagggtgta 324  Q
    ||||||| ||||||||||||||  |||||||||||| ||| |||||||||||||    
T  50934561 taccaatgttactttataaatgcattatttgatatattttatttaaagggtgta 50934614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 34029393 - 34029349
Alignment:
Q  280 ttactttataaatgttttatttgatata-cttttttaaagggtgt 323  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||    
T  34029393 ttactttataaatgttttatttgatatatgttttttaaagtgtgt 34029349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 39498790 - 39498707
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattg 345  Q
    |||| |||||||| | || ||| ||||||||| |||||||| ||||| ||||| ||||| ||| ||||||  |||||||||||||    
T  39498790 agtgtgtcacctatcgatgttattttataaatattttatttaatataattttt-aaaggatgtgccacgtgacacattctaattg 39498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 268 - 372
Target Start/End: Complemental strand, 23863917 - 23863813
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||||||| |||||||||||||  |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  23863917 cacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacattctaattggacaatgatatatatcattatg 23863818  T
Q  368 gtaca 372  Q
    |||||    
T  23863817 gtaca 23863813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 34392195 - 34392086
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| | ||||| ||||||||||||||| |||||| |||||||    
T  34392195 cacctaccaatcttactttataaatgctttatttgatatatttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatg 34392096  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  34392095 gtacacaagt 34392086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 383
Target Start/End: Original strand, 4779644 - 4779757
Alignment:
Q  270 cctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggt 369  Q
    |||| |||| |||||||||||||  ||||||||||||| ||||||||||| |||  |||||  |||||||||||||||||||| |||||| ||||||| |    
T  4779644 cctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatataccattatgat 4779743  T
Q  370 acataagtcttatc 383  Q
    ||| |||| |||||    
T  4779744 acacaagtgttatc 4779757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 25275735 - 25275627
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    |||||| |||| ||||||| |||||  ||||||||||||||||||||||||| ||| ||||||   |||||||||||||||||||||||||| |||||||    
T  25275735 cacctatcaatgttacttt-taaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatataccattatg 25275637  T
Q  368 gtacataagt 377  Q
     |||| ||||    
T  25275636 atacagaagt 25275627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 4775694 - 4775796
Alignment:
Q  271 ctaccaatattactttataaat-gttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggt 369  Q
    |||||||| ||||||||| ||| ||||||||| ||||| ||||||||||| ||| |||| | ||||| | ||||||||||||| |||||| |||||||||    
T  4775694 ctaccaatcttactttattaattgttttatttaatatatttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggt 4775793  T
Q  370 aca 372  Q
    |||    
T  4775794 aca 4775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 41095900 - 41095791
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||||||| ||||||||||| | ||||||||| ||| | |||| | |||||  |||| ||| ||||| |||||| |||||||    
T  41095900 cacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatataccattatg 41095801  T
Q  368 gtacataagt 377  Q
    |||| |||||    
T  41095800 gtacctaagt 41095791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 21604015 - 21604063
Alignment:
Q  267 tcacctaccaatattactttataaatgttttatttgatatactttttta 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21604015 tcacctaccaatgttactttataaatgttttatttgatatactttttta 21604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 7381752 - 7381851
Alignment:
Q  271 ctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||| |||  || ||  |||||| ||||||| ||||  |||||| |||||| |||    
T  7381752 ctaccaatgttactttataaattctttatttgatata-ttttttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagta 7381850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 21606161 - 21606205
Alignment:
Q  333 cacattctaattggacaatgatatatatcattatggtacataagt 377  Q
    |||||||||||||||||||| |||||| ||||||| |||| ||||    
T  21606161 cacattctaattggacaatggtatataccattatgatacagaagt 21606205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 35869685 - 35869583
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||| |||||| |||||||    
T  35869685 cacctaccaatgttactatataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatg 35869586  T
Q  368 gta 370  Q
    |||    
T  35869585 gta 35869583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 21260844 - 21260951
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||  |||| ||||||     
T  21260844 agtgtgtcacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtgccacatggcacattctaattgggtaatgttatatac 21260943  T
Q  361 cattatgg 368  Q
    ||||||||    
T  21260944 cattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 33249495 - 33249394
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||  |||||||||||||| |||| | ||||| ||||||||  |||||||||||||    
T  33249495 agtgtgtcacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatat 33249396  T
Q  361 ca 362  Q
    ||    
T  33249395 ca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 22343387 - 22343498
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| |||| ||| |||| |||||||||||||| ||||||||||||| | ||||||||| ||| |||| |  ||||||||||||| |||||||||||||     
T  22343387 agtgtgtcatctatcaatgttactttataaatgctttatttgatatattattttaaaggatgtgccacatgacacattctaattgaacaatgatatatac 22343486  T
Q  361 cattatggtaca 372  Q
    ||||||||||||    
T  22343487 cattatggtaca 22343498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 51811971 - 51812070
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||| ||| ||  ||||||||||||||| |||| |||||| |||||||    
T  51811971 cacctaccaatgttactttataaattttttttttgatatatttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatg 51812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 12473761 - 12473870
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||  ||| |  |||||||||||||  ||||| |||||| |||||||    
T  12473761 cacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatg 12473860  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  12473861 gtacacaagt 12473870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 12528170 - 12528279
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||  ||| |  |||||||||||||  ||||| |||||| |||||||    
T  12528170 cacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatg 12528269  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  12528270 gtacacaagt 12528279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 55590555 - 55590631
Alignment:
Q  295 tttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtac 371  Q
    ||||||||||||||||||||||||| ||| ||||||  |||||||||||||| |||||  ||||| |||||||||||    
T  55590555 tttatttgatatacttttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtac 55590631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 1796642 - 1796722
Alignment:
Q  303 atatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacataagtcttatc 383  Q
    ||||| ||||||||||| |||  ||||| ||||| | ||||||||||||| |||||| |||||||||||| |||| |||||    
T  1796642 atatatttttttaaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatc 1796722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 33174584 - 33174632
Alignment:
Q  280 ttactttataaatgttttatttgatatacttttttaaagggtgtaccacgt 330  Q
    ||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  33174584 ttactttataaatgttttatttgatata--tttttaaagggtgtgccacgt 33174632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 52012839 - 52012896
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccac 328  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  52012839 taccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccac 52012896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 52910163 - 52910126
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgata 305  Q
    |||||||||||||||||||||||||| |||||||||||    
T  52910163 cacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 35781023 - 35781069
Alignment:
Q  325 ccacgttgcacattctaattggacaatgatatatatcattatggtac 371  Q
    |||||| ||||||||||||||| ||||| |||||| |||||||||||    
T  35781023 ccacgtggcacattctaattgggcaatggtatataccattatggtac 35781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 9799473 - 9799421
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgt 323  Q
    ||||||| |||||||||||||||||||||| |||||  |||||||||| ||||    
T  9799473 taccaatgttactttataaatgttttatttaatatatgttttttaaagtgtgt 9799421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 5403990 - 5403881
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||||| ||| ||| |  |||||||||||||||||||| |||||| |||||||    
T  5403990 cacctaccaatgttactttatagatgttttatttgatatatttttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatg 5403891  T
Q  368 gtacataagt 377  Q
    ||||| ||||    
T  5403890 gtacacaagt 5403881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 1211951 - 1211849
Alignment:
Q  275 caatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacata 374  Q
    |||| |||||||||  ||| ||||||||||||| ||||||||||||||| |||||| |||||||||||| || ||||| |||||| |||||||||||| |    
T  1211951 caatgttactttatcgatgctttatttgatatatttttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacaca 1211852  T
Q  375 agt 377  Q
    |||    
T  1211851 agt 1211849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 8982621 - 8982702
Alignment:
Q  178 cggatcttaactaaaaatgt-atgggagccaaaaaattgtaacttata--tatacaagttgtttcataaaatagacataaat 256  Q
    |||||||| ||||||||||| | |||||||||| ||| ||||||||||  ||||||||||||||||||||||||||| ||||    
T  8982621 cggatcttgactaaaaatgtgaggggagccaaataatggtaacttatatatatacaagttgtttcataaaatagacaaaaat 8982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 32644952 - 32644852
Alignment:
Q  266 gtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcatta 365  Q
    ||||||||| ||| |||||||| ||||  |||||||| |||| ||||||||||||||| |||| |   ||| |||||||| |||||| |||||| |||||    
T  32644952 gtcacctacaaatgttacttta-aaatactttatttgttatatttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccatta 32644854  T
Q  366 tg 367  Q
    ||    
T  32644853 tg 32644852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 11251 - 11355
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||| ||  ||||| |||||| |||||||    
T  11251 cacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatg 11350  T
Q  368 gtaca 372  Q
    |||||    
T  11351 gtaca 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 372
Target Start/End: Complemental strand, 11254142 - 11254038
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||| ||  ||||| |||||| |||||||    
T  11254142 cacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatg 11254043  T
Q  368 gtaca 372  Q
    |||||    
T  11254042 gtaca 11254038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 24337941 - 24337835
Alignment:
Q  271 ctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    |||||||| |||||||||| ||| |||||||||||||  |||||||||||||| |||| | ||||||||||||||||||||| |||||| ||||||||||    
T  24337941 ctaccaatgttactttatagatgctttatttgatatatatttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggta 24337842  T
Q  371 cataagt 377  Q
    || ||||    
T  24337841 cacaagt 24337835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 41179684 - 41179568
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatat 360  Q
    |||| |||||||||| || |||||||||||||||||||||| ||||| |||||||| || ||| |||| | ||||||||||||||| ||||| ||||||     
T  41179684 agtgtgtcacctaccgatgttactttataaatgttttatttaatatatttttttaatggatgtgccacatggcacattctaattgggcaatggtatatac 41179585  T
Q  361 cattatggtacataagt 377  Q
    |||||||||||| ||||    
T  41179584 cattatggtacacaagt 41179568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 4708428 - 4708345
Alignment:
Q  261 agtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaatt 344  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||||    
T  4708428 agtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaagggtgtgccacgtggcacattctaatt 4708345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 18168442 - 18168547
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattat 366  Q
    ||||||||||| |||||||||||||  |||||||||||||  ||||||||||| ||| ||||||  |||| ||||||| |  ||| ||||||| ||||||    
T  18168442 cacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtgccacgtgacacaatctaattaggtaataatatataccattat 18168541  T
Q  367 ggtaca 372  Q
    ||||||    
T  18168542 ggtaca 18168547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 18631999 - 18632104
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattat 366  Q
    ||||||||||| |||||||||||||  |||||||||||||  ||||||||||| ||| ||||||  |||| ||||||| |  ||| ||||||| ||||||    
T  18631999 cacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtgccacgtgacacaatctaattaggtaataatatataccattat 18632098  T
Q  367 ggtaca 372  Q
    ||||||    
T  18632099 ggtaca 18632104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 1514864 - 1514920
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtacca 327  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||  ||||||||    
T  1514864 taccaatgttactttataaatgttttatttgatatatattttttaaaatgtgtacca 1514920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 8462176 - 8462276
Alignment:
Q  259 atagtgagtcacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatat 358  Q
    |||||| | ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || ||||||  |||||| ||||||||||||| |||||    
T  8462176 atagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgtgccacgtgacacattttaattggacaatggtatat 8462275  T
Q  359 a 359  Q
    |    
T  8462276 a 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 32676193 - 32676297
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||||  ||| |||| | ||||| ||||||||||||||| |||||| ||||||     
T  32676193 cacctaccaatgttactttataaatgctttatttgatatatttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattata 32676292  T
Q  368 gtaca 372  Q
    |||||    
T  32676293 gtaca 32676297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 29119426 - 29119334
Alignment:
Q  280 ttactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtaca 372  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||| |||| | ||||||||||||||| ||||  |||||| | ||||||||||    
T  29119426 ttactttatagatgctttatttgatatatttttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtaca 29119334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 2569094 - 2569202
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatg 367  Q
    ||||||||||| |||| |||  |||| ||||||||||||| ||||||||||||||| ||| || ||||||||||||| | ||||  ||||||||||||||    
T  2569094 cacctaccaatgttacattaccaatgctttatttgatata-ttttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatg 2569192  T
Q  368 gtacataagt 377  Q
     |||| ||||    
T  2569193 ttacacaagt 2569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 383
Target Start/End: Complemental strand, 46435564 - 46435464
Alignment:
Q  283 ctttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtacataagtcttat 382  Q
    ||||||| ||| |||||||||||||  ||||||||||||||  ||| |  |||||||||||||| ||||| |||||| |||||||||||| ||||| |||    
T  46435564 ctttatagatgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T
Q  383 c 383  Q
    |    
T  46435464 c 46435464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 8809750 - 8809644
Alignment:
Q  272 taccaatattactttataaatgttttatttgatata-cttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggta 370  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||| |||| |  ||||   |||||||  |||| |||||| ||| ||||||    
T  8809750 taccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggta 8809651  T
Q  371 cataagt 377  Q
    || ||||    
T  8809650 cacaagt 8809644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 3688951 - 3688917
Alignment:
Q  269 acctaccaatattactttataaatgttttatttga 303  Q
    |||||||||| ||||||||||||||||||||||||    
T  3688951 acctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 25161366 - 25161402
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgat 304  Q
    |||||| |||| |||||||||||||||||||||||||    
T  25161366 cacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 34255 - 34353
Alignment:
Q  272 taccaatattactttataaatgttttatttgatatacttttttaaagggtgtaccacgttgcacattctaattggacaatgatatatatcattatggtac 371  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||  ||||||||||||||| |||| |||||| | |||||||||    
T  34255 taccaatattactttataaatattttatttgatata-ttttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtac 34352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 13113 - 13010
Alignment:
Q  275 caatattactttataaatgttttatttgatatacttttttaaagggt-gtaccacgttgcacattctaattggacaatgatatatatcattatggtacat 373  Q
    |||| |||||||||  ||| ||||||||||||| ||||||||||||| || |||||| |||||||||||| || ||||| |||||| ||||||||||||     
T  13113 caatgttactttatcgatgctttatttgatatatttttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacac 13014  T
Q  374 aagt 377  Q
    ||||    
T  13013 aagt 13010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 23213 - 23162
Alignment:
Q  268 cacctaccaatattactttataaatgttttatttgatatacttttttaaagg 319  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||| |||||    
T  23213 cacctaccaattttactttataaatattttatttgatatattttttaaaagg 23162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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