View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_58 (Length: 383)
Name: NF1459_low_58
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 29972742 - 29973006
Alignment:
| Q |
20 |
ctagatctttgtgacgttaacatgatcacatgactctaaattaaggttttattatgctcaacaatattatcattggtattagtaaaatatactta-ttga |
118 |
Q |
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| T |
29972742 |
ctagatgtttgtgacgttaacatgatcacatgactctaaattaaggttttattatgctcaacaatattatcattggtattagtaaaatatacttaattga |
29972841 |
T |
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| Q |
119 |
aaacgagtgatgatattgttgatttggtggtttgaggggagaaacatagagcttggaggataatgagatcattggatcaactccttatcaac-aatttaa |
217 |
Q |
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| T |
29972842 |
aaacgagtgatgatattgttgatttggtggtttgaagggagaaacatagagcttggaggataatgagatcattggatcaactccttatcaacaaatttaa |
29972941 |
T |
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| Q |
218 |
cagctaattacaccttcttc-nnnnnnnataagaaaagctaataacacttagtattattattcat |
281 |
Q |
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| T |
29972942 |
cagctaattacaccttcttcttttttttataagaaaagctaataacacttagtattattattcat |
29973006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 29973037 - 29973098
Alignment:
| Q |
312 |
tgaatattgtacttaattttgacatacatacgatatgtatatgctggaatatttgttttcat |
373 |
Q |
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| T |
29973037 |
tgaatattgtacttaattttgacatacatacgatatgtatatgctggaatatttgttttcat |
29973098 |
T |
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