View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_59 (Length: 381)
Name: NF1459_low_59
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 13516766 - 13516472
Alignment:
| Q |
8 |
gagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttggttatggtcatg |
107 |
Q |
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| T |
13516766 |
gagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttggttatggtcatg |
13516667 |
T |
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| Q |
108 |
gtgcttttggtattgattgcttgcaagaagaagatgaagtagggtcagaaattgaacatgatggtggaagttcaatgtgaagaattggaaaataaaaact |
207 |
Q |
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| T |
13516666 |
gtgcttttggtattgattgcttgcaagaagaagatgaagcagggtcagaaattgaacatgatggtggaagttcaatgtgaagaattggaaaataaaaact |
13516567 |
T |
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| Q |
208 |
atggtgatgatgaattcttatccagcatcaccgtactatgaagcattgacacataataattttnnnnnnnttaaataattgaatgtaatcacatg |
302 |
Q |
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| T |
13516566 |
atggtgatgatgaattcttatccagcatcaccgtactatgaagcattgacacataataatttttaaaaaattaaataattgaatgtaatcacatg |
13516472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 13606299 - 13606005
Alignment:
| Q |
8 |
gagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttggttatggtcatg |
107 |
Q |
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| T |
13606299 |
gagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttggttatggtcatg |
13606200 |
T |
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| Q |
108 |
gtgcttttggtattgattgcttgcaagaagaagatgaagtagggtcagaaattgaacatgatggtggaagttcaatgtgaagaattggaaaataaaaact |
207 |
Q |
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| T |
13606199 |
gtgcttttggtattgattgcttgcaagaagaagatgaagcagggtcagaaattgaacatgatggtggaagttcaatgtgaagaattggaaaataaaaact |
13606100 |
T |
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| Q |
208 |
atggtgatgatgaattcttatccagcatcaccgtactatgaagcattgacacataataattttnnnnnnnttaaataattgaatgtaatcacatg |
302 |
Q |
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| T |
13606099 |
atggtgatgatgaattcttatccagcatcaccgtactatgaagcattgacacataataatttttaaaaaattaaataattgaatgtaatcacatg |
13606005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 13516451 - 13516390
Alignment:
| Q |
305 |
tatgtactagacaccgaatccactttcaacctgaggcatctgtgtaatatagcatatgtatt |
366 |
Q |
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| T |
13516451 |
tatgtaccaaacatcgaatccactttcaatctgaggtgtctgtgtagtatagcatatgtatt |
13516390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 13605984 - 13605923
Alignment:
| Q |
305 |
tatgtactagacaccgaatccactttcaacctgaggcatctgtgtaatatagcatatgtatt |
366 |
Q |
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| T |
13605984 |
tatgtaccaaacatcgaatccactttcaatctgaggtgtctgtgtagtatagcatatgtatt |
13605923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 36570103 - 36570188
Alignment:
| Q |
11 |
aagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttgg |
96 |
Q |
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| T |
36570103 |
aagaattgtggaaagctttggtattgtatctgtggttctgattttaaacacaagaggtctcttaaagatcatatcaaagcttttgg |
36570188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 21035680 - 21035543
Alignment:
| Q |
8 |
gagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaaacataaaaggtctcttaaagaccatattaaagcctttggttatggtcatg |
107 |
Q |
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||||||||||||||||| | ||||||||| | ||||| || |||||||| ||||| | || |||||||| ||||| | ||| ||||| |||||||| |
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| T |
21035680 |
gagaagaattgtggaaagctttggtattgtctttgtggttcggattttaagcataagcgatcgcttaaagatcatataagagcttttgggagtggtcatg |
21035581 |
T |
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| Q |
108 |
gtgcttttggtattgattgcttgcaagaagaagatgaa |
145 |
Q |
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| T |
21035580 |
ctgcttatggaattgatggttttgaagaagaggatgaa |
21035543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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