View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_6 (Length: 622)
Name: NF1459_low_6
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Complemental strand, 37763422 - 37762827
Alignment:
| Q |
17 |
aatcacaatgatgtgttattggggaaagttaaagttacattttaaagcttcaataaaatcattatcataaatcataatgatttcattaaatttatattga |
116 |
Q |
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| T |
37763422 |
aatcacaatgatgtgttattggcgaaagttaaagttacattttgaagcttcaataaaatcattatcataaatcataatgatttcattaaatttatattga |
37763323 |
T |
|
| Q |
117 |
tttcaaacatatataaagtgcagcttttgttatatattaatgtgagacgtcgtgattccgacaaacttaccatgttagggtaaatcaagctcatgaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| |||| ||||| |
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| T |
37763322 |
tttcaaacatatataaagtgcagcttttgttatatattaatgtgagacgtcgtgattctgacaaactcaccatgttaagataaatcaagttcataaataa |
37763223 |
T |
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| Q |
217 |
gggtnnnnnnnnnnnnnnnnngatgttatttgtcaaaattttatttgtgtagttcaaaatgatgacagtttgataaacacattgcaaatccagggaggag |
316 |
Q |
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| T |
37763222 |
gggtaaaaaagaaaggaaaaagatgttatttgtcaaaattttatttgtgtagttcaaaatgatgacagtttgataaacacattgcaaatccagggaggag |
37763123 |
T |
|
| Q |
317 |
gtggaatcaaatcagggaagatggtgacaccaaacaacaaagaattcatgttcatatgttttcttgtggctctatggtactcatcaaacattggtgtgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37763122 |
gtggaatcaaatcagggaagatggtgacaccaaacaacaaagaattcatgttcatatgttttcttgtggctctatggtactcatcaaacattggtgtgat |
37763023 |
T |
|
| Q |
417 |
tcttctcaacaagtaccttatctcaaattatgggttcaagtttccaatcttcctcacaatgtgtcacatgacagcttgtgctatttttagttacatctcc |
516 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37763022 |
tcttctcaacaagtaccttatctcaaattatggtttcaagtttccaatcttcctcacaatgtgtcacatgacagcttgtgctatttttagttacatctcc |
37762923 |
T |
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| Q |
517 |
attgtgttctttaagattgttcctcaacagatgattaaatcaagatcacagttcttaaaggttgcaactttgagctttgttttttgtgggtctgtg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37762922 |
attgtgttctttaagattgttcctcaacagatgattaaatcaaggtcacagttcttaaaggttgcaactttgagctttgttttttgtgggtctgtg |
37762827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 491
Target Start/End: Original strand, 35016039 - 35016140
Alignment:
| Q |
390 |
atggtactcatcaaacattggtgtgattcttctcaacaagtaccttatctcaaattatgggttcaagtttccaatcttcctcacaatgtgtcacatgaca |
489 |
Q |
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|||||||||||| ||||| || || | || || ||||| |||||| ||||||| || || ||||| | ||||| |||||||| ||||||||||||||| |
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| T |
35016039 |
atggtactcatccaacataggagttctactcctaaacaaataccttctctcaaactacggtttcaaatacccaattttcctcaccatgtgtcacatgaca |
35016138 |
T |
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| Q |
490 |
gc |
491 |
Q |
| |
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|| |
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| T |
35016139 |
gc |
35016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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