View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_62 (Length: 376)
Name: NF1459_low_62
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 10174428 - 10174758
Alignment:
| Q |
8 |
ccaagaatattttcggcaatccttgtaaccctaacaacatgtgaatgtgttgaagccaatatcttcccttgaaactcttgtttccactcttccaacacat |
107 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10174428 |
ccaataatattttcggcaatccttgtaacccgaacaacatgtgaatgtgttgaaaccaatatcttcccttgaaactcttgtttccactcttc-aacacat |
10174526 |
T |
|
| Q |
108 |
ttctgaccagaaatcctctcgatggaagcttttgttggatgaatgtaacgcgttcgattgatgtaaggaatagtttcagcgttttgtaagcggaatacaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10174527 |
ttctgaccagaaatcctctcgatggaagcttttgttggatcaatgtaacgcgttcgattgatgtaaggactaatttcagcgttttgtaagcggaatacaa |
10174626 |
T |
|
| Q |
208 |
tgcgtcgagatattgcagctgaagcaaacgaagcagcggcaagagtcaaatatttgagcttttccattgctgtatgaagagtaaccagaagccatattgt |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10174627 |
tgcgtcaagatattgcagctgaagcaaacgaagcagcggcaagagtcaaatatttgagcttttccattgctgtatgaagagtaaccagaagccatattgt |
10174726 |
T |
|
| Q |
308 |
taatggtaaatctcatttcatatgcaaaagtg |
339 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
10174727 |
taatggtaaatctcatttcatatgtaaaagtg |
10174758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 1238781 - 1239103
Alignment:
| Q |
8 |
ccaagaatattttcggcaatccttgtaaccctaacaacatgtgaatgtgttgaagccaatatcttcccttgaaactcttgtttccactcttccaacacat |
107 |
Q |
| |
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|||| |||||||| ||| |||||||||||||||||| ||| ||||||||||||| ||| || |||||||||||| ||||||||||||||| ||| | | |
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| T |
1238781 |
ccaacaatatttttggcgatccttgtaaccctaacactatgagaatgtgttgaaggtaatgtcatcccttgaaactgttgtttccactcttcaaactc-t |
1238879 |
T |
|
| Q |
108 |
ttctgaccagaaatcctctcgatggaagcttttgttggatgaatgtaacgcgttcgattgatgtaaggaatagtttcagcgttttgtaagcggaatacaa |
207 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| | |||| |||| |||||||| ||||| ||||||||| ||| ||||||| |||||||| || |
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| T |
1238880 |
ctctgaccagaaatcctctcggtggaagcttttgttgggtcaatgaaacgggttcgattaatgtatggaatagttccaggattttgtaggcggaataaaa |
1238979 |
T |
|
| Q |
208 |
tgcgtcgagatattgcagctgaagcaaacgaagcagcggcaagagtcaaatatttgagcttttccattgctgtatgaagagtaaccagaagccatattgt |
307 |
Q |
| |
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||||| |||| |||||| ||||||||| ||||||||||||||||| |||||| ||||| || ||||| ||||||||||||||||||| ||||||||||| |
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| T |
1238980 |
tgcgtggagaaattgcaattgaagcaaatgaagcagcggcaagagtaaaatatctgagcattcccatttctgtatgaagagtaaccaggagccatattgt |
1239079 |
T |
|
| Q |
308 |
taatggtaaatctcatttcatatg |
331 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
1239080 |
taatggtaaacctcatttcatatg |
1239103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 1173933 - 1173633
Alignment:
| Q |
8 |
ccaagaatattttcggcaatccttgtaaccctaacaacatgtgaatgtgttgaagccaatatcttcccttgaaactcttgtttccactcttccaacacat |
107 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| |||||||||||||||||| ||| || |||||||||| ||||||||||||||| ||| | | |
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| T |
1173933 |
ccaacaatatttttggtgatccttgtaaccctaacactatgtgaatgtgttgaagctaatgtcagcccttgaaacagttgtttccactcttcaaactc-t |
1173835 |
T |
|
| Q |
108 |
ttctgaccagaaatcctctcgatggaagcttttgttggatgaatgtaacgcgttcgattgatgtaaggaatagtttcagcgttttgtaagcggaatacaa |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| | |||| |||| ||||| || || || |||| ||| ||||| ||||||||||||||| ||| |
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| T |
1173834 |
ctctgaccagaaatcctctcggtggaagcttgtgttgggtcaatgaaacgggttcggttaatttatggaacagtctcagcattttgtaagcggaatccaa |
1173735 |
T |
|
| Q |
208 |
tgcgtcgagatattgcagctgaagcaaacgaagcagcggcaagagtcaaatatttgagcttttccattgc-----tgtatgaagagtaaccagaagccat |
302 |
Q |
| |
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| || |||| ||| ||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
1173734 |
ggtgtggagaaattacaggtgaagcaattgaagcagcggcgagagtaaaatatctgagctttcccattgctgtactgtatgaagagtaaccagaagccat |
1173635 |
T |
|
| Q |
303 |
at |
304 |
Q |
| |
|
|| |
|
|
| T |
1173634 |
at |
1173633 |
T |
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