View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_63 (Length: 371)

Name: NF1459_low_63
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_63
NF1459_low_63
[»] chr7 (1 HSPs)
chr7 (59-354)||(27329360-27329646)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 59 - 354
Target Start/End: Complemental strand, 27329646 - 27329360
Alignment:
Q  59 gagagcacaacattcaatatactttcctttctctcttcacagtctgcaacagccagcttgttgagtgcagaatttatacttttgtggcaacatttgtcca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27329646 gagagcacaacattcaatatactttcctttctctcttcacagtctgcaacagccagcttattgagtgcagaatttatacttttgtggcaacatttgtcca 27329547  T
Q  159 tgtctgagagcagtactatttagcaaatagacgtgttccctctacctctagtctattttctttgtattaactcatcacattttaggagaagttgaccata 258  Q
    | ||||||||||   |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27329546 tttctgagagca---ctatttagcaaatagacgtgttccctcta------gtctattttctttgtattaactcatcacattttaggagaagttgaccata 27329456  T
Q  259 ataattcaaactatgaatctgaagtaaatagaatatgatataatgggtcgaattttgaaataggatgaccaattttgcaaaaagataaatacagag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27329455 ataattcaaactatgaatctgaagtaaatagaatatgatataatgggtcgaattttgaaataggaagaccaattttgcaaaaagataaatacagag 27329360  T

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